Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   DBQ26_RS01730 Genome accession   NZ_CP028574
Coordinates   105012..106013 (+) Length   333 a.a.
NCBI ID   WP_017481717.1    Uniprot ID   A0A9X3QGF6
Organism   Acinetobacter pittii strain WCHAP005046     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100012..111013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBQ26_RS01700 (DBQ26_01705) - 101571..101723 (-) 153 WP_107908592.1 hypothetical protein -
  DBQ26_RS01705 (DBQ26_01710) rpoZ 101762..102040 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  DBQ26_RS01710 (DBQ26_01715) gmk 102113..102742 (-) 630 WP_005804544.1 guanylate kinase -
  DBQ26_RS01715 (DBQ26_01720) ispH 102865..103815 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DBQ26_RS01720 (DBQ26_01725) fimU 103985..104458 (+) 474 WP_017481718.1 pilus assembly FimT family protein Machinery gene
  DBQ26_RS01725 (DBQ26_01730) pilV 104452..105012 (+) 561 WP_079381023.1 type IV pilus modification protein PilV Machinery gene
  DBQ26_RS01730 (DBQ26_01735) pilW 105012..106013 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  DBQ26_RS01735 (DBQ26_01740) pilX 106010..106819 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DBQ26_RS01740 (DBQ26_01745) pilY1 106831..110685 (+) 3855 WP_017481715.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35814.49 Da        Isoelectric Point: 6.6395

>NTDB_id=285572 DBQ26_RS01730 WP_017481717.1 105012..106013(+) (pilW) [Acinetobacter pittii strain WCHAP005046]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNTSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSTVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=285572 DBQ26_RS01730 WP_017481717.1 105012..106013(+) (pilW) [Acinetobacter pittii strain WCHAP005046]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCAACTCAATTATTTATTGGTGGACTTCTATCAAGTCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGCTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCTTGGGGCGGTGTTGTATTAACTGGTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACCTATATTGCTGACACATTACTTAGTCGTGGTGCAGGTGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACACTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTACTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

85.285

100

0.853

Multiple sequence alignment