Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DBQ26_RS01735 Genome accession   NZ_CP028574
Coordinates   106010..106819 (+) Length   269 a.a.
NCBI ID   WP_017481716.1    Uniprot ID   A0AAN4MGD2
Organism   Acinetobacter pittii strain WCHAP005046     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101010..111819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBQ26_RS01700 (DBQ26_01705) - 101571..101723 (-) 153 WP_107908592.1 hypothetical protein -
  DBQ26_RS01705 (DBQ26_01710) rpoZ 101762..102040 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  DBQ26_RS01710 (DBQ26_01715) gmk 102113..102742 (-) 630 WP_005804544.1 guanylate kinase -
  DBQ26_RS01715 (DBQ26_01720) ispH 102865..103815 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DBQ26_RS01720 (DBQ26_01725) fimU 103985..104458 (+) 474 WP_017481718.1 pilus assembly FimT family protein Machinery gene
  DBQ26_RS01725 (DBQ26_01730) pilV 104452..105012 (+) 561 WP_079381023.1 type IV pilus modification protein PilV Machinery gene
  DBQ26_RS01730 (DBQ26_01735) pilW 105012..106013 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  DBQ26_RS01735 (DBQ26_01740) pilX 106010..106819 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DBQ26_RS01740 (DBQ26_01745) pilY1 106831..110685 (+) 3855 WP_017481715.1 PilC/PilY family type IV pilus protein Machinery gene
  DBQ26_RS01745 (DBQ26_01750) pilY2 110696..111178 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  DBQ26_RS01750 (DBQ26_01755) pilE 111175..111600 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28558.38 Da        Isoelectric Point: 7.7238

>NTDB_id=285573 DBQ26_RS01735 WP_017481716.1 106010..106819(+) (pilX) [Acinetobacter pittii strain WCHAP005046]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=285573 DBQ26_RS01735 WP_017481716.1 106010..106819(+) (pilX) [Acinetobacter pittii strain WCHAP005046]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907

Multiple sequence alignment