Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CDG55_RS13995 Genome accession   NZ_CP028561
Coordinates   2616091..2617578 (+) Length   495 a.a.
NCBI ID   WP_087536528.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHA45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2611091..2622578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS13970 (CDG55_13960) ribD 2611997..2613097 (-) 1101 WP_087536532.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CDG55_RS13975 (CDG55_13965) nrdR 2613110..2613574 (-) 465 WP_087536531.1 transcriptional regulator NrdR -
  CDG55_RS13980 (CDG55_13970) - 2613701..2615113 (-) 1413 WP_087536530.1 ammonium transporter -
  CDG55_RS13985 (CDG55_13975) glnK 2615181..2615519 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  CDG55_RS13990 (CDG55_13980) - 2615795..2616022 (+) 228 WP_087536529.1 accessory factor UbiK family protein -
  CDG55_RS13995 (CDG55_13985) comM 2616091..2617578 (+) 1488 WP_087536528.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CDG55_RS14000 (CDG55_13990) - 2617630..2618418 (-) 789 WP_087536527.1 TorF family putative porin -
  CDG55_RS14005 (CDG55_13995) - 2618754..2619566 (-) 813 WP_213066144.1 TorF family putative porin -
  CDG55_RS14010 (CDG55_14000) - 2620291..2621616 (+) 1326 WP_087536525.1 OprD family outer membrane porin -
  CDG55_RS14015 (CDG55_14005) ppa 2621722..2622249 (-) 528 WP_046737873.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54428.34 Da        Isoelectric Point: 7.2187

>NTDB_id=285530 CDG55_RS13995 WP_087536528.1 2616091..2617578(+) (comM) [Acinetobacter sp. WCHA45]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLAEAAVRESKDRVRSAIINSGFLFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTDGFEFIGELALDGHLRPVTGILPIAMACQQAQHRLLVPTNNLEEANQFPQFEVYAASHL
QDVCAHFLGTSHLSTAPKQENLTSTHYQFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAQHTFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSVENIQRYQNRISGPLLDRIDLHIDVPPLQTKELQDQSPTE
SSTIVRQRVMKAYDKQMLRQQCLNQALSPNLLEQYAQLDENSAKIIEMAQQRLNLSARAYHRVLRVARTIADLAESDIIL
TTHLTEALSYRGHST

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=285530 CDG55_RS13995 WP_087536528.1 2616091..2617578(+) (comM) [Acinetobacter sp. WCHA45]
ATGTCTTTCGCAAAAATTTACACGAGGGGTTTATTAGGTTTACATGCCCCTCAAATCGAAGTTGAAGTTCATATCAGTTC
AGGACTCCCCTCCTTAACCATTGTAGGTTTAGCAGAAGCCGCTGTAAGGGAAAGTAAAGATCGTGTTCGATCAGCAATTA
TCAACAGTGGTTTCTTGTTTCCAACCAAACGTTTAACGATTAATTTAGCACCTGCAGATCTTCCTAAAGATGGCTCCCGC
CTAGATTTACCGATCGCACTAGGAATTTTAATTGCTTCAGGTCAACTTCCTGAAAATTGTACTGACGGCTTTGAATTTAT
TGGTGAACTTGCATTAGATGGACATTTACGCCCTGTTACTGGAATATTGCCAATTGCGATGGCTTGCCAACAAGCCCAAC
ACCGCTTATTGGTACCTACTAATAATCTAGAAGAAGCCAATCAATTTCCGCAGTTTGAAGTTTATGCTGCCAGTCATTTA
CAAGATGTGTGTGCACACTTTTTGGGCACTTCTCATTTATCAACCGCACCCAAACAAGAAAATTTAACAAGTACTCACTA
TCAATTTGATCTTGCAGATGTCAAAGGTCAATTACGTCCCCGTCGTGCACTAGAAATAGCAGCAGCGGGTGGGCATTCTC
TACTTTTCAAAGGTCCACCTGGCACAGGTAAAACATTACTGGCTTCTCGGCTACCTTCTATTTTGCCACCACTTAATGCT
CAAGAAAATTTAGAAGTCGCAAGTATTTATTCGGTTGCAAATGCTCAACATACTTTTGGACAACGACCCTTCCGTGCACC
ACACCATACTGCGTCAGCGATTGCACTAGTTGGAGGCGGTTCACAACCTAAACCAGGCGAAATTACACTTGCACATTTAG
GCGTATTATTTTTAGATGAATTACCTGAATTTGACCGTAAAGTTTTGGAAGTTCTCAGACAACCTCTAGAGTCGAAAGAG
ATCGTCATCTCCCGTGCGGCAAGACAAATGACATTTCCAGCGAATTTTCAATTTATTGCAGCAATGAATCCATGTCCTTG
TGGCTACGCATTTAATCAAGATAGCCGCTGCCAGTGCTCAGTAGAAAATATTCAACGCTATCAAAATCGTATCTCAGGTC
CATTATTAGATCGTATTGATTTACATATTGATGTACCACCTTTGCAGACCAAAGAACTACAAGATCAAAGTCCGACAGAA
AGTTCTACAATTGTGCGGCAACGCGTGATGAAAGCTTATGATAAACAAATGTTAAGACAGCAATGTTTGAATCAGGCACT
TTCTCCAAATTTACTAGAACAATATGCTCAATTAGATGAAAATTCAGCCAAAATCATCGAAATGGCTCAACAGCGACTTA
ATCTCTCAGCACGCGCCTATCATCGTGTACTTCGTGTTGCACGAACCATAGCCGACTTAGCTGAAAGCGATATCATTTTA
ACAACCCATTTAACAGAAGCCTTGTCTTATCGGGGTCATTCAACTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.406

100

0.517
  comM Vibrio campbellii strain DS40M4

50.503

100

0.507
  comM Glaesserella parasuis strain SC1401

49.699

100

0.501
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila str. Paris

48.992

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.833

100

0.467

Multiple sequence alignment