Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DBP88_RS03995 Genome accession   NZ_CP028538
Coordinates   375618..376142 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain SCEH020042     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 370618..381142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP88_RS03970 (DBP88_03985) aphA 370942..371655 (+) 714 WP_003860292.1 acid phosphatase AphA -
  DBP88_RS03975 (DBP88_03990) - 371768..372184 (+) 417 WP_023305263.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DBP88_RS03980 (DBP88_03995) - 372187..372540 (+) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  DBP88_RS03985 (DBP88_04000) uvrA 372544..375366 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  DBP88_RS03995 (DBP88_04010) ssb 375618..376142 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  DBP88_RS04000 (DBP88_04015) - 376203..376484 (-) 282 WP_022646751.1 YjcB family protein -
  DBP88_RS04005 (DBP88_04020) - 376916..378316 (+) 1401 WP_032676709.1 sensor domain-containing diguanylate cyclase -
  DBP88_RS04010 (DBP88_04025) - 378582..380147 (+) 1566 WP_023305265.1 EAL domain-containing protein -
  DBP88_RS04015 (DBP88_04030) soxS 380154..380480 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  DBP88_RS04020 (DBP88_04035) soxR 380579..381037 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=285407 DBP88_RS03995 WP_003860284.1 375618..376142(+) (ssb) [Enterobacter hormaechei strain SCEH020042]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=285407 DBP88_RS03995 WP_003860284.1 375618..376142(+) (ssb) [Enterobacter hormaechei strain SCEH020042]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAACAGCCTCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCTCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374

Multiple sequence alignment