Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ASUC_RS03180 Genome accession   NC_009655
Coordinates   674026..675237 (-) Length   403 a.a.
NCBI ID   WP_012072365.1    Uniprot ID   -
Organism   Actinobacillus succinogenes 130Z     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 669026..680237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASUC_RS03150 (Asuc_0605) - 669491..670612 (+) 1122 WP_012072359.1 FAD:protein FMN transferase -
  ASUC_RS03155 (Asuc_0606) nqrM 670622..670867 (+) 246 WP_012072360.1 (Na+)-NQR maturation NqrM -
  ASUC_RS03160 (Asuc_0607) mnmA 670993..672162 (+) 1170 WP_012072361.1 tRNA 2-thiouridine(34) synthase MnmA -
  ASUC_RS03165 (Asuc_0608) - 672211..672477 (-) 267 WP_012072362.1 GNAT family N-acetyltransferase -
  ASUC_RS11340 yacG 672488..672691 (-) 204 WP_245822096.1 DNA gyrase inhibitor YacG -
  ASUC_RS03170 (Asuc_0609) coaE 672689..673306 (-) 618 Protein_611 dephospho-CoA kinase -
  ASUC_RS03175 (Asuc_0610) - 673337..674029 (-) 693 WP_012072364.1 A24 family peptidase -
  ASUC_RS03180 (Asuc_0611) pilC 674026..675237 (-) 1212 WP_012072365.1 type II secretion system F family protein Machinery gene
  ASUC_RS03185 (Asuc_0612) pilB 675227..676669 (-) 1443 WP_012072366.1 GspE/PulE family protein Machinery gene
  ASUC_RS03190 (Asuc_0613) pilA 676681..677136 (-) 456 WP_012072367.1 prepilin peptidase-dependent pilin Machinery gene
  ASUC_RS03195 (Asuc_0614) ampD 677251..677808 (+) 558 WP_012072368.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ASUC_RS03200 (Asuc_0615) - 677881..678339 (-) 459 WP_012072369.1 surface-adhesin E family protein -
  ASUC_RS03205 (Asuc_0616) - 678451..679101 (-) 651 WP_012072370.1 HAD family phosphatase -
  ASUC_RS03210 (Asuc_0617) artM 679257..679943 (-) 687 WP_012072371.1 arginine ABC transporter permease ArtM -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46108.04 Da        Isoelectric Point: 10.1094

>NTDB_id=28516 ASUC_RS03180 WP_012072365.1 674026..675237(-) (pilC) [Actinobacillus succinogenes 130Z]
MKLSMYRWKATDRFDQQQRGELVAEDEIKAKQILFSRQLRNIRLQRNWQLSPAPKNVEICDLLQQLATLLQASVPLKNSL
HILLSNCANIPLYQWLQQLLRDIESGLAFSQTLNRQQKFLTHQECQLIRVGEMTGQLAKVCQQIALSKQQGLALQRKIQK
ILLYPMMILIISLILTALLLIFIVPQFAEMYGGESTQLPLFTQILMNLSQTLQQYFVLFCLGLAAIIFFIKHRLRHSLRL
HRQKNKLVAVIPVLGQIVSLSRLVRFCRSLHLMLHAGVPLHQALLSFLPTDKSDTVIRYDVALIQEVQFMLQGIQKGFAF
SACVGSALFPMQAQQMLQVGERAGKLPLMLQHIADNYQQQLDHKIDLLSQMLEPFLMLIIGSIIGLIMLGMYLPIFNMGS
LIQ

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=28516 ASUC_RS03180 WP_012072365.1 674026..675237(-) (pilC) [Actinobacillus succinogenes 130Z]
ATGAAACTTAGCATGTACCGTTGGAAGGCAACGGATCGTTTCGATCAACAGCAACGGGGCGAATTAGTTGCGGAAGATGA
AATCAAGGCCAAGCAGATTCTCTTTTCACGCCAGCTGCGAAACATCAGATTACAGCGAAACTGGCAACTTTCTCCCGCCC
CGAAAAACGTCGAAATCTGCGACTTGCTGCAACAACTGGCTACCTTGTTGCAGGCTTCGGTTCCTCTGAAAAACAGCCTG
CACATTCTGCTATCCAACTGCGCCAATATTCCGCTATATCAATGGTTACAACAGTTATTACGGGATATAGAAAGCGGACT
GGCATTCTCTCAAACATTAAACCGACAACAAAAATTTCTGACTCATCAGGAATGTCAGCTCATCCGAGTAGGGGAAATGA
CGGGACAACTCGCCAAGGTTTGTCAGCAGATTGCCCTGTCCAAACAACAAGGCTTAGCATTGCAACGGAAGATCCAGAAA
ATTTTGCTCTACCCCATGATGATTCTGATTATTTCACTCATTTTGACCGCACTTTTACTGATTTTTATTGTGCCGCAATT
TGCCGAAATGTACGGCGGAGAATCCACGCAACTTCCGCTATTCACGCAAATTTTAATGAATCTTTCTCAAACCTTGCAGC
AATATTTTGTGCTGTTCTGTCTGGGATTAGCAGCAATAATTTTCTTCATAAAACACCGGCTTCGACATTCGCTTCGGTTA
CACCGACAAAAAAACAAATTGGTCGCTGTCATCCCCGTATTAGGGCAGATCGTCTCGCTTTCCCGCTTGGTTCGCTTTTG
TCGCAGTTTGCACTTAATGCTACACGCCGGTGTGCCGCTTCATCAGGCGCTGCTGTCATTTCTGCCGACAGACAAGTCCG
ACACCGTTATTCGATATGACGTCGCTTTAATTCAAGAAGTACAGTTTATGCTGCAAGGCATTCAGAAAGGTTTCGCATTT
TCCGCTTGTGTGGGCTCGGCGCTGTTTCCTATGCAGGCACAGCAAATGCTTCAGGTCGGCGAACGCGCGGGAAAACTGCC
TCTGATGCTGCAACACATTGCGGATAACTACCAACAGCAATTGGATCACAAAATCGATCTGTTATCACAAATGCTGGAAC
CTTTTTTAATGCTGATTATCGGTAGTATTATCGGTTTGATTATGTTGGGTATGTATTTACCGATTTTCAATATGGGATCG
CTGATTCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)

Type II secretion system (T2SS), protein F (T2SSF)

(266-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

53.941

100

0.543
  pilC Haemophilus influenzae 86-028NP

53.941

100

0.543
  pilC Glaesserella parasuis strain SC1401

41.103

99.007

0.407

Multiple sequence alignment