Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ASUC_RS02605 Genome accession   NC_009655
Coordinates   554985..556520 (-) Length   511 a.a.
NCBI ID   WP_012072260.1    Uniprot ID   A6VLN3
Organism   Actinobacillus succinogenes 130Z     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 549985..561520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASUC_RS02585 (Asuc_0501) xylB 550545..551990 (+) 1446 WP_012072256.1 xylulokinase -
  ASUC_RS02590 (Asuc_0502) dusA 552142..553122 (+) 981 WP_012072257.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ASUC_RS02595 (Asuc_0503) asnA 553275..554267 (-) 993 WP_012072258.1 aspartate--ammonia ligase -
  ASUC_RS02600 (Asuc_0504) asnC 554454..554906 (+) 453 WP_012072259.1 transcriptional regulator AsnC -
  ASUC_RS02605 (Asuc_0505) comM 554985..556520 (-) 1536 WP_012072260.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ASUC_RS02610 (Asuc_0506) yihA 556628..557248 (-) 621 WP_012072261.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ASUC_RS02615 (Asuc_0507) - 557303..557716 (-) 414 WP_012072262.1 PACE efflux transporter -
  ASUC_RS02620 (Asuc_0508) - 557786..559150 (-) 1365 WP_012072263.1 PTS ascorbate transporter subunit IIC -
  ASUC_RS02625 (Asuc_0509) - 559181..559450 (-) 270 WP_012072264.1 PTS sugar transporter subunit IIB -
  ASUC_RS02630 (Asuc_0510) tusA 559648..559887 (-) 240 WP_012072265.1 sulfurtransferase TusA -
  ASUC_RS02635 (Asuc_0511) - 559966..560574 (+) 609 WP_012072266.1 YigZ family protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 56204.60 Da        Isoelectric Point: 9.7157

>NTDB_id=28514 ASUC_RS02605 WP_012072260.1 554985..556520(-) (comM) [Actinobacillus succinogenes 130Z]
MSLAIVYSRASIGVQAPLVTIEVHISNGKPAFVLVGLPEKTVKEAQDRVRSALINAQFKYPAKRITVNLAPADLPKEGGR
FDLPIALGILAASGQIEANHLRRFEFLGELALTGNLRGVQGIIPAILEAQKAKRQMIIAPQNANEASLISNQETYYAGSL
LDVVQFLNNQTALPSTDQLAQQSAVNFFKGNQADLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMSDQEAIETAAVASLVQNELNFSNWKQRPFRAPHHSASLPALVGGGTIPRPGEISLAHNGVLFLDELPEFERRVLDALR
QPLESGEIIISRAMGKIRFPARFQLIAAMNPSPTGNYQGTHNRTTPQQIIRYLNKLSGPFLDRFDLSIEVPLLPQGALQS
KDDRGESSLEVRSKILKVREIQLNRQDKVNAHLGSKEIDRFCQLNEADAVFLEQALNKLGLSVRAYHRILKVSRTIADLA
DEERINRMHLAEALGYRAMDRLLMKLHDGRE

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=28514 ASUC_RS02605 WP_012072260.1 554985..556520(-) (comM) [Actinobacillus succinogenes 130Z]
ATGTCCCTCGCTATTGTTTACAGCCGTGCGTCCATCGGAGTTCAGGCTCCGCTCGTGACCATTGAAGTACATATCAGCAA
CGGAAAACCTGCATTTGTTTTGGTCGGTCTACCGGAAAAAACGGTTAAAGAAGCACAGGACCGCGTACGCAGCGCATTGA
TTAACGCTCAATTTAAATATCCCGCCAAACGTATTACGGTTAATCTGGCACCTGCGGATTTACCTAAAGAAGGAGGTCGT
TTCGATTTACCTATCGCCCTCGGTATTCTGGCGGCATCGGGGCAGATTGAAGCTAACCACCTACGCCGATTCGAATTTCT
CGGCGAACTGGCGTTAACCGGCAACCTGCGTGGCGTACAAGGCATTATCCCGGCAATACTGGAAGCTCAAAAAGCCAAAC
GGCAAATGATTATTGCTCCGCAAAATGCCAATGAAGCATCGCTGATTTCCAATCAGGAAACCTATTACGCCGGTTCGTTA
CTGGATGTGGTGCAGTTTTTGAATAATCAGACGGCGTTGCCTTCCACTGATCAGCTGGCTCAACAAAGTGCGGTCAATTT
TTTTAAAGGAAATCAAGCGGATTTAACGGATATTATCGGCCAACAACATGCCAAACGCGCTTTAACTATCGCCGCCGCCG
GACAGCACAACTTACTGTTTCTCGGTCCGCCCGGCACAGGCAAAACCATGCTGGCAAGCCGCTTGACGGGATTATTACCG
GAAATGTCCGATCAAGAGGCCATAGAAACCGCCGCCGTTGCCAGTTTAGTACAAAATGAATTAAATTTTTCCAATTGGAA
ACAACGCCCTTTCCGTGCACCGCATCACAGCGCTTCCCTGCCGGCATTAGTCGGCGGCGGCACCATTCCTCGTCCGGGGG
AAATTTCTCTGGCCCACAACGGCGTATTATTTTTGGATGAATTACCTGAGTTTGAACGGCGGGTACTGGATGCCTTACGT
CAACCTTTGGAAAGCGGCGAAATCATTATTTCCCGTGCCATGGGTAAAATCCGATTCCCCGCCAGATTCCAATTAATTGC
CGCGATGAATCCCAGTCCTACCGGCAACTATCAGGGTACGCACAATCGTACGACTCCTCAACAAATTATCCGTTATTTAA
ATAAACTTTCCGGTCCGTTCCTCGATCGGTTCGATCTATCCATTGAAGTCCCGCTACTGCCGCAGGGCGCGTTGCAAAGC
AAGGATGATCGTGGAGAAAGCAGCCTTGAAGTGCGGTCAAAAATTTTAAAGGTTCGTGAAATTCAGTTGAATCGGCAAGA
CAAAGTAAACGCGCACTTAGGCAGTAAAGAAATCGATCGGTTTTGTCAATTAAACGAAGCGGATGCCGTTTTTTTAGAAC
AGGCATTGAACAAACTCGGACTGTCGGTGCGGGCATACCACCGTATTTTGAAAGTTTCGCGTACCATCGCCGATTTAGCC
GATGAAGAACGAATCAACCGTATGCATTTAGCAGAAGCATTGGGTTATCGGGCAATGGATCGACTATTGATGAAATTACA
CGACGGACGCGAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6VLN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

81.102

99.413

0.806
  comM Glaesserella parasuis strain SC1401

75

99.413

0.746
  comM Vibrio cholerae strain A1552

65.625

100

0.658
  comM Vibrio campbellii strain DS40M4

64.625

99.022

0.64
  comM Legionella pneumophila str. Paris

51.984

98.63

0.513
  comM Legionella pneumophila strain ERS1305867

51.984

98.63

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.471

100

0.477

Multiple sequence alignment