Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DA377_RS01145 Genome accession   NZ_CP028439
Coordinates   199647..200165 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain 8-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 194647..205165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA377_RS01125 - 195725..195931 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  DA377_RS01130 - 195978..197981 (+) 2004 WP_004392974.1 molybdopterin-dependent oxidoreductase -
  DA377_RS01135 ychF 198108..199208 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  DA377_RS01140 rpsF 199320..199607 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  DA377_RS01145 ssbA 199647..200165 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  DA377_RS01150 rpsR 200209..200448 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  DA377_RS01155 - 200641..201222 (+) 582 WP_004392986.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  DA377_RS01160 - 201219..201776 (+) 558 WP_004392989.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  DA377_RS01165 xth 201773..202531 (+) 759 WP_004392994.1 exodeoxyribonuclease III -
  DA377_RS01170 - 202594..203532 (+) 939 WP_004392996.1 LacI family DNA-binding transcriptional regulator -
  DA377_RS01175 - 203589..203969 (+) 381 WP_004392999.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=284898 DA377_RS01145 WP_004392979.1 199647..200165(+) (ssbA) [Bacillus velezensis strain 8-2]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=284898 DA377_RS01145 WP_004392979.1 199647..200165(+) (ssbA) [Bacillus velezensis strain 8-2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGTTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment