Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SK637_RS09685 Genome accession   NZ_CP028415
Coordinates   1941255..1942013 (+) Length   252 a.a.
NCBI ID   WP_033689615.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1936255..1947013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS09655 (SK637_01882) comE 1936859..1937611 (-) 753 WP_000866062.1 competence system response regulator transcription factor ComE Regulator
  SK637_RS09660 (SK637_01883) comD/comD1 1937608..1938933 (-) 1326 WP_033689609.1 competence system sensor histidine kinase ComD Regulator
  SK637_RS09665 (SK637_01884) comC/comC2 1938946..1939068 (-) 123 WP_033689611.1 competence-stimulating peptide ComC Regulator
  SK637_RS09675 (SK637_01886) rlmH 1939350..1939829 (-) 480 WP_000695939.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SK637_RS09680 (SK637_01887) htrA 1940013..1941197 (+) 1185 WP_033689613.1 S1C family serine protease Regulator
  SK637_RS09685 (SK637_01888) spo0J 1941255..1942013 (+) 759 WP_033689615.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29018.33 Da        Isoelectric Point: 6.8945

>NTDB_id=284745 SK637_RS09685 WP_033689615.1 1941255..1942013(+) (spo0J) [Streptococcus mitis strain SK637]
MEKFEMISITDIQKNPYQPRKEFDGEKLHELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
LSDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNQEQQDYFFQRIIEEDISVRKLEALLTEKKQKKLQKTNHFIQNEEEQLKKLLGLDVEIKLSKKDSGKIIIAFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=284745 SK637_RS09685 WP_033689615.1 1941255..1942013(+) (spo0J) [Streptococcus mitis strain SK637]
ATGGAAAAATTTGAAATGATTTCTATCACGGATATACAAAAAAATCCCTATCAACCTCGAAAAGAATTTGATGGAGAAAA
ACTACATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATTCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTAAGGTCTATACCAGCTGTTGTTAAACAA
CTTTCAGATCAAGAAATGATGGTCCAGTCCATCATTGAAAATTTGCAAAGAGAAAATTTAAATCCAATAGAAGAAGCACG
CGCCTATGAATCTCTTGTAGAGAAAGGATTTACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCTTATATCA
GCAACTCTATTCGCTTGCTTTCCTTGCCAGAACAGATCCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCGCATGCT
CGTTCGCTAGTTGGGTTGAATCAGGAACAACAAGACTATTTCTTTCAACGAATCATAGAGGAAGACATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACTTCAAAAAACGAATCATTTCATACAAAATGAAGAAGAACAGT
TAAAAAAACTACTCGGATTAGATGTAGAAATCAAATTGTCTAAAAAAGATAGTGGCAAAATCATTATTGCTTTCTCAAAT
CAAGAAGAATACAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.407

100

0.496

Multiple sequence alignment