Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SK637_RS09520 Genome accession   NZ_CP028415
Coordinates   1909304..1909966 (-) Length   220 a.a.
NCBI ID   WP_033689572.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1904304..1914966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS09495 (SK637_01851) - 1904454..1904720 (-) 267 WP_001278169.1 Veg family protein -
  SK637_RS09500 (SK637_01852) dnaB 1904722..1906074 (-) 1353 WP_033689570.1 replicative DNA helicase -
  SK637_RS09505 (SK637_01853) rplI 1906118..1906570 (-) 453 WP_000864214.1 50S ribosomal protein L9 -
  SK637_RS09510 (SK637_01854) - 1906567..1908540 (-) 1974 WP_033689571.1 DHH family phosphoesterase -
  SK637_RS09515 (SK637_01855) hpf 1908676..1909224 (-) 549 WP_000599100.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SK637_RS09520 (SK637_01856) comFC/cflB 1909304..1909966 (-) 663 WP_033689572.1 ComF family protein Machinery gene
  SK637_RS09525 (SK637_01857) comFA/cflA 1909963..1911261 (-) 1299 WP_033689573.1 DEAD/DEAH box helicase Machinery gene
  SK637_RS09530 (SK637_01858) - 1911318..1911953 (+) 636 WP_033689575.1 YigZ family protein -
  SK637_RS10210 - 1912047..1912142 (+) 96 Protein_1786 PH domain-containing protein -
  SK637_RS09540 (SK637_01859) cysK 1912239..1913165 (+) 927 WP_000029885.1 cysteine synthase A -
  SK637_RS09545 (SK637_01860) tsf 1913286..1914326 (-) 1041 WP_033689577.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25349.41 Da        Isoelectric Point: 7.7114

>NTDB_id=284739 SK637_RS09520 WP_033689572.1 1909304..1909966(-) (comFC/cflB) [Streptococcus mitis strain SK637]
MKCLLCGQTMKTILTFSSLLLLKNDDSCLCSDCDSTFERIGEEYCPNCMKTGLLTKCQDCQFWCKKGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPERLLERGFNQVEGLVEVAGFSFQDLLDKREERASYS
KSRSERLATELPFFIKSGVTIPKKILLIDDIYTTGTTINRVKKLLEEAGAEDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=284739 SK637_RS09520 WP_033689572.1 1909304..1909966(-) (comFC/cflB) [Streptococcus mitis strain SK637]
ATGAAGTGCTTGTTGTGTGGGCAGACTATGAAGACTATTTTAACTTTTAGTAGTCTCTTACTTCTGAAGAATGATGACTC
TTGTCTTTGTTCAGACTGTGACTCTACTTTTGAGAGGATTGGAGAAGAGTACTGTCCAAACTGTATGAAAACAGGTTTGT
TAACGAAGTGTCAAGACTGTCAATTTTGGTGTAAAAAAGGAGTTGAGGTGAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTTTTAAGAAAAGTGTTCGCTTCATTTTTAAGTGA
GGAGTTAAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGAAAGATTGCTCGAGAGGGGATTTAACC
AGGTTGAAGGTTTAGTTGAAGTAGCAGGGTTCTCTTTTCAAGACTTACTGGATAAGAGAGAAGAGAGAGCTAGTTATTCT
AAAAGTCGTTCAGAACGCTTGGCAACAGAACTTCCTTTCTTTATTAAAAGTGGAGTTACTATTCCTAAAAAAATCTTACT
TATAGATGACATTTATACTACTGGAACAACTATAAATCGTGTGAAGAAACTATTGGAAGAGGCTGGTGCTGAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

90.909

100

0.909
  comFC/cflB Streptococcus mitis NCTC 12261

90.909

100

0.909
  comFC/cflB Streptococcus pneumoniae TIGR4

90.455

100

0.905
  comFC/cflB Streptococcus pneumoniae Rx1

90

100

0.9
  comFC/cflB Streptococcus pneumoniae D39

90

100

0.9
  comFC/cflB Streptococcus pneumoniae R6

90

100

0.9

Multiple sequence alignment