Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   C9I44_RS08140 Genome accession   NZ_CP028386
Coordinates   1591977..1592624 (-) Length   215 a.a.
NCBI ID   WP_023189914.1    Uniprot ID   -
Organism   Lactococcus garvieae strain IBB3403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1589468..1593406 1591977..1592624 within 0


Gene organization within MGE regions


Location: 1589468..1593406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I44_RS08125 - 1589468..1590000 (+) 533 Protein_1607 transposase -
  C9I44_RS08130 (C9I44_08095) - 1589987..1590106 (-) 120 Protein_1608 O-methyltransferase -
  C9I44_RS08135 (C9I44_08100) pepF 1590109..1591914 (-) 1806 WP_003132689.1 oligoendopeptidase F Regulator
  C9I44_RS08140 (C9I44_08105) coiA 1591977..1592624 (-) 648 WP_023189914.1 competence protein CoiA family protein Machinery gene
  C9I44_RS08145 (C9I44_08110) - 1592855..1593406 (+) 552 WP_011997527.1 recombinase family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 26190.60 Da        Isoelectric Point: 9.6868

>NTDB_id=284581 C9I44_RS08140 WP_023189914.1 1591977..1592624(-) (coiA) [Lactococcus garvieae strain IBB3403]
MKRLKERTENYQVHGFTVLWLMGENLWLKDQITNLQKNLVYFSENRGFYYWELDFKTQKLRLKTLIHEDLSGKIIYLQEE
IPFGQGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPKWLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLE
VFDDEIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYVIMKKQKKDMNE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=284581 C9I44_RS08140 WP_023189914.1 1591977..1592624(-) (coiA) [Lactococcus garvieae strain IBB3403]
ATGAAACGTTTAAAAGAACGGACAGAAAATTATCAAGTACACGGTTTTACGGTGCTTTGGCTTATGGGGGAAAATTTATG
GTTAAAAGACCAAATAACAAACCTTCAAAAAAATTTAGTCTATTTTTCAGAAAATAGAGGTTTCTATTATTGGGAATTAG
ATTTTAAAACTCAGAAGCTGAGATTGAAGACACTGATTCATGAAGATTTGAGTGGGAAAATTATTTATTTACAAGAAGAA
ATCCCTTTTGGGCAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAAAGTTACTGACAATACCACTTAT
TGTTGATCTTAAACTAGCGGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAATGGTTGAAACTTCAGGAAAAAT
ATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCTTTTATTGCGCCTTTGGGGTTGAACTTACTTGAA
GTTTTTGATGATGAAATCCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATCTCTATTATGAAAACTTTTTAAT
AAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGTTATAATGAAAAAGCAGAAGAAGGATATGA
ATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

71.226

98.605

0.702
  coiA Streptococcus mitis NCTC 12261

43.961

96.279

0.423
  coiA Streptococcus pneumoniae TIGR4

42.995

96.279

0.414
  coiA Streptococcus pneumoniae Rx1

42.995

96.279

0.414
  coiA Streptococcus pneumoniae D39

42.995

96.279

0.414
  coiA Streptococcus pneumoniae R6

42.995

96.279

0.414

Multiple sequence alignment