Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   C9I44_RS02720 Genome accession   NZ_CP028386
Coordinates   517716..518411 (+) Length   231 a.a.
NCBI ID   WP_004259096.1    Uniprot ID   -
Organism   Lactococcus garvieae strain IBB3403     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 512716..523411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I44_RS02695 (C9I44_02665) - 512949..513650 (+) 702 WP_004259114.1 DeoR/GlpR family DNA-binding transcription regulator -
  C9I44_RS02700 (C9I44_02670) pfkB 513647..514573 (+) 927 WP_004259111.1 1-phosphofructokinase -
  C9I44_RS02705 (C9I44_02675) - 514588..516492 (+) 1905 WP_004259108.1 fructose-specific PTS transporter subunit EIIC -
  C9I44_RS02710 (C9I44_02680) - 516604..516846 (+) 243 WP_003135050.1 type B 50S ribosomal protein L31 -
  C9I44_RS02715 (C9I44_02685) - 517063..517614 (+) 552 WP_004259099.1 YceD family protein -
  C9I44_RS02720 (C9I44_02690) covR 517716..518411 (+) 696 WP_004259096.1 response regulator transcription factor Regulator
  C9I44_RS02725 (C9I44_02695) covS 518500..519990 (+) 1491 WP_004259093.1 HAMP domain-containing histidine kinase Regulator
  C9I44_RS02730 (C9I44_02700) - 520387..521958 (+) 1572 WP_004259090.1 ABC transporter permease subunit -
  C9I44_RS02735 (C9I44_02705) - 521959..522696 (+) 738 WP_004259087.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26979.74 Da        Isoelectric Point: 5.4730

>NTDB_id=284569 C9I44_RS02720 WP_004259096.1 517716..518411(+) (covR) [Lactococcus garvieae strain IBB3403]
MNSSKRILIIEDDKNIARFVSLELEHEGYQTAVQGNGRKGLEEAMSKDYDLILLDLMLPELDGFEVARRLRREKDTHIIM
MTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRSLFRREDHIHTIEKSDNTSFRDLVIDKTNRTVHRGKKVIDLTRR
EYDLLLTLMQNVGDVVTREYLVSEVWGYEEGTETNVVDVYIRYLRNKIDVEGRESYIQTVRGMGYVMRDRK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=284569 C9I44_RS02720 WP_004259096.1 517716..518411(+) (covR) [Lactococcus garvieae strain IBB3403]
ATGAATTCATCTAAACGTATTTTGATTATCGAAGACGATAAAAACATTGCGAGATTTGTTTCACTTGAGCTTGAACACGA
AGGATACCAAACTGCGGTTCAAGGCAATGGTCGTAAAGGTCTTGAAGAAGCAATGTCAAAAGATTATGATTTGATTTTGC
TTGACTTAATGCTCCCAGAGCTTGATGGCTTTGAGGTTGCACGACGCTTACGCCGTGAAAAAGATACACATATTATTATG
ATGACTGCACGTGATTCGACAATGGACCGTGTAGCAGGTCTTGATATTGGCGCAGATGACTATATTACAAAACCATTTGC
TATTGAAGAATTGTTAGCGCGTGTCCGCTCACTCTTCCGTCGTGAAGATCATATCCACACGATTGAAAAGTCAGACAATA
CTTCATTCCGTGATTTGGTAATTGATAAGACCAACCGTACTGTACACCGTGGAAAAAAAGTTATTGACCTTACACGCCGT
GAGTACGATTTGCTTTTGACATTGATGCAAAATGTAGGTGATGTCGTAACACGTGAATACTTGGTTTCTGAAGTATGGGG
TTACGAAGAAGGTACAGAAACAAACGTTGTGGACGTTTATATCCGTTATCTGCGTAACAAAATTGACGTGGAGGGCCGTG
AAAGCTATATCCAAACGGTTCGTGGTATGGGATATGTCATGCGTGACCGCAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Lactococcus lactis subsp. lactis strain DGCC12653

87.773

99.134

0.87
  covR Streptococcus salivarius strain HSISS4

66.81

100

0.671
  vicR Streptococcus mutans UA159

43.723

100

0.437
  micA Streptococcus pneumoniae Cp1015

42.424

100

0.424

Multiple sequence alignment