Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C9446_RS02445 | Genome accession | NZ_CP028384 |
| Coordinates | 572952..573476 (+) | Length | 174 a.a. |
| NCBI ID | WP_137021169.1 | Uniprot ID | - |
| Organism | Providencia heimbachae strain 99101 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 567952..578476
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9446_RS02435 (C9446_02455) | - | 568457..569650 (+) | 1194 | WP_068437574.1 | aromatic amino acid transaminase | - |
| C9446_RS02440 (C9446_02460) | uvrA | 569719..572553 (-) | 2835 | WP_137021168.1 | excinuclease ABC subunit UvrA | - |
| C9446_RS02445 (C9446_02465) | ssb | 572952..573476 (+) | 525 | WP_137021169.1 | single-stranded DNA-binding protein | Machinery gene |
| C9446_RS02450 (C9446_02470) | - | 573694..574869 (+) | 1176 | WP_137021170.1 | tyrosine-type recombinase/integrase | - |
| C9446_RS22045 (C9446_02475) | - | 574857..576449 (+) | 1593 | WP_137021171.1 | tyrosine-type recombinase/integrase | - |
| C9446_RS02460 (C9446_02480) | - | 576442..578451 (+) | 2010 | WP_137021172.1 | integrase | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18690.66 Da Isoelectric Point: 4.9468
>NTDB_id=284534 C9446_RS02445 WP_137021169.1 572952..573476(+) (ssb) [Providencia heimbachae strain 99101]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTNEMREKTEWHRVAIFGKLAEIAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQGGGQGGWGQPQQPQAQQFSGGGAPARSQAPAPATQ
SNEPPIDFDDDIPF
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTNEMREKTEWHRVAIFGKLAEIAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQGGGQGGWGQPQQPQAQQFSGGGAPARSQAPAPATQ
SNEPPIDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=284534 C9446_RS02445 WP_137021169.1 572952..573476(+) (ssb) [Providencia heimbachae strain 99101]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGCGCGGTGGCTAACCTGACTCTGGCAACTTCTGAAAGTTGGCGCGATAAGCAAACGAATGAAATGCGTGAAAAAACAG
AGTGGCACCGTGTTGCTATTTTTGGCAAATTAGCTGAAATCGCGGGTGAATACCTGAAAAAAGGCTCGCAAGTTTACATT
GAAGGTTCTTTGCAGACACGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTATACAACAGAAGTTGTAGTTAACATTGG
CGGTTCAATGCAAATGCTTGGTGGCCGTGGCGGCGATGCGCCTTCACAAGGTCAAGGTGGTGGTCAAGGCGGTTGGGGAC
AACCTCAGCAACCTCAAGCTCAGCAATTCAGTGGCGGTGGCGCACCAGCTCGCTCACAAGCACCTGCACCAGCGACACAA
TCTAATGAACCACCAATCGATTTTGATGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGCGCGGTGGCTAACCTGACTCTGGCAACTTCTGAAAGTTGGCGCGATAAGCAAACGAATGAAATGCGTGAAAAAACAG
AGTGGCACCGTGTTGCTATTTTTGGCAAATTAGCTGAAATCGCGGGTGAATACCTGAAAAAAGGCTCGCAAGTTTACATT
GAAGGTTCTTTGCAGACACGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTATACAACAGAAGTTGTAGTTAACATTGG
CGGTTCAATGCAAATGCTTGGTGGCCGTGGCGGCGATGCGCCTTCACAAGGTCAAGGTGGTGGTCAAGGCGGTTGGGGAC
AACCTCAGCAACCTCAAGCTCAGCAATTCAGTGGCGGTGGCGCACCAGCTCGCTCACAAGCACCTGCACCAGCGACACAA
TCTAATGAACCACCAATCGATTTTGATGACGATATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
69.231 |
100 |
0.724 |
| ssb | Glaesserella parasuis strain SC1401 |
56.15 |
100 |
0.603 |
| ssb | Neisseria gonorrhoeae MS11 |
48.045 |
100 |
0.494 |
| ssb | Neisseria meningitidis MC58 |
46.961 |
100 |
0.489 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
35.196 |
100 |
0.362 |