Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CLIM_RS07400 Genome accession   NC_010803
Coordinates   1589776..1590009 (+) Length   77 a.a.
NCBI ID   WP_012466414.1    Uniprot ID   -
Organism   Chlorobium limicola DSM 245     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1584776..1595009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLIM_RS07370 (Clim_1477) - 1584818..1585369 (+) 552 WP_012466410.1 TIR domain-containing protein -
  CLIM_RS13315 - 1585933..1586175 (+) 243 WP_150081620.1 hypothetical protein -
  CLIM_RS07375 (Clim_1479) - 1586408..1586866 (-) 459 WP_012466411.1 hypothetical protein -
  CLIM_RS07380 (Clim_1480) - 1586872..1587276 (-) 405 WP_012466412.1 helix-turn-helix transcriptional regulator -
  CLIM_RS07385 (Clim_1481) - 1587279..1587764 (-) 486 WP_012466413.1 hypothetical protein -
  CLIM_RS07390 (Clim_1482) - 1588092..1588772 (-) 681 WP_395992093.1 tyrosine-type recombinase/integrase -
  CLIM_RS07395 (Clim_1483) - 1588746..1589792 (+) 1047 WP_012465765.1 IS630 family transposase -
  CLIM_RS07400 (Clim_1484) radC 1589776..1590009 (+) 234 WP_012466414.1 JAB domain-containing protein Machinery gene
  CLIM_RS07405 (Clim_1485) - 1590352..1591005 (+) 654 WP_012466415.1 hypothetical protein -
  CLIM_RS13915 - 1591234..1591452 (-) 219 WP_223294061.1 hypothetical protein -
  CLIM_RS07415 (Clim_1487) - 1591624..1592007 (+) 384 WP_012466416.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 8684.82 Da        Isoelectric Point: 10.2289

>NTDB_id=28452 CLIM_RS07400 WP_012466414.1 1589776..1590009(+) (radC) [Chlorobium limicola DSM 245]
MRKLRSFNCRSNKPTNAYTLILVHNHPSGNPEPSNADKQVTKQIRSSANIIGIELLDHVIIGTNGNYFSFRQEGLFN

Nucleotide


Download         Length: 234 bp        

>NTDB_id=28452 CLIM_RS07400 WP_012466414.1 1589776..1590009(+) (radC) [Chlorobium limicola DSM 245]
ATGCGAAAGCTTCGTAGTTTTAATTGCCGGAGTAATAAACCCACAAACGCCTATACCCTCATTCTGGTCCACAACCACCC
ATCAGGCAACCCCGAACCAAGCAACGCCGATAAACAGGTAACCAAGCAAATCCGCAGCTCAGCCAACATCATCGGCATCG
AACTGCTCGACCACGTCATCATCGGCACCAACGGCAACTACTTCAGCTTCAGGCAAGAAGGGCTTTTCAACTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(16-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.541

79.221

0.377
  radC Streptococcus pneumoniae TIGR4

50.877

74.026

0.377
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.458

76.623

0.364
  radC Streptococcus gordonii str. Challis substr. CH1

49.123

74.026

0.364
  radC Streptococcus pneumoniae R6

49.123

74.026

0.364
  radC Streptococcus pneumoniae D39

49.123

74.026

0.364

Multiple sequence alignment