Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C7Y67_RS16520 Genome accession   NZ_CP028342
Coordinates   3331488..3333011 (+) Length   507 a.a.
NCBI ID   WP_108745130.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate R13     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3326488..3338011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7Y67_RS16505 (C7Y67_16500) ilvE 3328131..3329069 (-) 939 WP_015297538.1 branched-chain-amino-acid transaminase -
  C7Y67_RS16510 (C7Y67_16505) ilvM 3329082..3329366 (-) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  C7Y67_RS16515 (C7Y67_16510) ilvG 3329377..3331023 (-) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  C7Y67_RS16520 (C7Y67_16515) comM 3331488..3333011 (+) 1524 WP_108745130.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C7Y67_RS16525 (C7Y67_16520) - 3333068..3334024 (-) 957 WP_029835378.1 DUF2860 domain-containing protein -
  C7Y67_RS16530 (C7Y67_16525) - 3334187..3335065 (+) 879 WP_020904428.1 acyltransferase -
  C7Y67_RS16535 (C7Y67_16530) - 3335107..3335709 (-) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  C7Y67_RS16540 (C7Y67_16535) - 3335744..3336730 (-) 987 WP_017449323.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55022.06 Da        Isoelectric Point: 8.4861

>NTDB_id=284276 C7Y67_RS16520 WP_108745130.1 3331488..3333011(+) (comM) [Vibrio parahaemolyticus isolate R13]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGSSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=284276 C7Y67_RS16520 WP_108745130.1 3331488..3333011(+) (comM) [Vibrio parahaemolyticus isolate R13]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAACTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCTCCGGCGGATTTACCTAAAGAAGGCGGTCGT
TTTGATTTGCCTATCGCATTGGGTATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCTCTGTCTGGAGGATTAAGACCTGTCAAAGGCGTGCTTCCAGCCGCGTTGGCTGCAAGTAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCGGCATTAGTTGGTGGTAGCTCGGTGCCAAGACCGGGTGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAGCCACTGGAA
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGCCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCAAAAGGCACGTTGGCGGAAGGTGGTGATCGA
GGTGAGCCCACGGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGCGAGAGTATGCTCAATCGAAACGGCAAAGTCAACGC
ACTGCTCGGCAGCCGTGAGATTGAGGCATTTTGCCCGTTGCAAAAAAGCGATGCGGAATTTCTCGAAACTGCACTGCATC
GGCTGGGATTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCCCGCACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAACGTTCTCATTTAGCGGAAGCGCTCGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.083

100

0.941
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.898

100

0.44

Multiple sequence alignment