Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Tharo_RS15675 Genome accession   NZ_CP028339
Coordinates   3334387..3335889 (-) Length   500 a.a.
NCBI ID   WP_107222001.1    Uniprot ID   A0A2R4BRZ9
Organism   Thauera aromatica K172     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3329387..3340889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Tharo_RS15650 (Tharo_3096) - 3329458..3330405 (-) 948 WP_107221996.1 branched-chain amino acid ABC transporter permease -
  Tharo_RS15655 (Tharo_3097) - 3330489..3331358 (-) 870 WP_107221997.1 branched-chain amino acid ABC transporter permease -
  Tharo_RS15660 (Tharo_3098) - 3331373..3332077 (-) 705 WP_107221998.1 ABC transporter ATP-binding protein -
  Tharo_RS15665 (Tharo_3099) - 3332077..3332916 (-) 840 WP_107221999.1 ABC transporter ATP-binding protein -
  Tharo_RS15670 (Tharo_3100) - 3333062..3334261 (-) 1200 WP_107222000.1 multidrug effflux MFS transporter -
  Tharo_RS15675 (Tharo_3101) comM 3334387..3335889 (-) 1503 WP_107222001.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Tharo_RS15680 (Tharo_3102) - 3335991..3336248 (-) 258 WP_107222002.1 accessory factor UbiK family protein -
  Tharo_RS15685 (Tharo_3103) - 3336521..3337231 (+) 711 WP_107222003.1 TorF family putative porin -
  Tharo_RS15690 (Tharo_3104) glnK 3337259..3337597 (+) 339 WP_075147733.1 P-II family nitrogen regulator -
  Tharo_RS15695 (Tharo_3105) amt 3337725..3338951 (+) 1227 WP_107222476.1 ammonium transporter -
  Tharo_RS15700 (Tharo_3106) - 3339034..3339324 (-) 291 WP_107222004.1 MtrB/PioB family outer membrane beta-barrel protein -
  Tharo_RS15705 (Tharo_3107) - 3339367..3339708 (-) 342 WP_107222005.1 type II toxin-antitoxin system RelE/ParE family toxin -
  Tharo_RS15710 (Tharo_3108) - 3339701..3339982 (-) 282 WP_107222006.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  Tharo_RS15715 (Tharo_3109) - 3340046..3340396 (-) 351 WP_107222007.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52812.53 Da        Isoelectric Point: 8.5222

>NTDB_id=284231 Tharo_RS15675 WP_107222001.1 3334387..3335889(-) (comM) [Thauera aromatica K172]
MSLALVRARALDGLDAPEVAVEVHLANGLPAFSLVGLPDTEVREARDRVRAAILSSQFEFPQRRITVNLAPADLPKEGGR
FDLAIAVGILVASGQVAAERLEALEFCGELSLNGALRPVRGVLAAALAAGREQRALVLPAGNAAEAVLARRTTVLPAASL
LAVCAHLNAHTALEPQPPAAPAAEGGRAVPDLAEVRGQLQARRALEVAAAGAHSLLLFGPPGTGKSMLAQRLAGVLPPMG
EDEALEAAALASIEGGFDPRDWGRRPFRAPHHSASAAALVGGGAIPRPGEISLAHHGVLFLDELPEFDRRVLEALREPLE
SGTVTVSRARRRAEFPARFQLVAAMNPCPCGHAGDPRRACRCTPDQVARYRGRLSGPLLDRIDLTVEVPAIDTEALLGSP
AGERSAVVRARVQAARERQLARQGGPNAHLGPAEVVRHCTPDDRGEALLRQAMKQLALSARAYHRVLRVARTLADLSGCE
RPGAAQVAEAVQYRRSLDAR

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=284231 Tharo_RS15675 WP_107222001.1 3334387..3335889(-) (comM) [Thauera aromatica K172]
ATGTCGCTTGCGCTCGTGCGCGCCCGCGCCCTCGATGGCCTCGATGCGCCCGAGGTCGCGGTCGAAGTCCATCTCGCCAA
CGGCCTGCCCGCGTTCAGCCTGGTCGGCCTGCCCGACACCGAGGTGCGCGAAGCGCGTGACCGGGTGCGGGCGGCGATCC
TGTCCTCCCAGTTCGAATTTCCCCAGCGCCGCATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAAGGCGGACGC
TTCGATCTGGCGATTGCGGTGGGGATTCTCGTCGCCTCCGGCCAGGTTGCGGCGGAGCGGCTCGAGGCGCTCGAGTTCTG
CGGCGAGCTGTCGCTCAACGGCGCGCTGCGCCCGGTGCGCGGCGTACTGGCGGCGGCGCTCGCGGCCGGGCGGGAGCAGC
GCGCGCTGGTGCTGCCGGCCGGCAATGCGGCCGAGGCCGTGCTCGCGCGGCGCACGACGGTGCTGCCGGCGGCGAGCCTA
CTCGCCGTATGCGCCCACCTGAATGCTCACACCGCGCTCGAACCGCAGCCACCCGCCGCACCCGCGGCCGAGGGCGGCCG
CGCGGTGCCCGATCTCGCCGAGGTGCGCGGCCAGCTGCAGGCGCGGCGCGCGCTCGAAGTGGCGGCGGCCGGGGCGCATT
CGCTGCTGCTGTTCGGCCCCCCCGGCACCGGCAAGTCGATGCTCGCCCAGCGCCTGGCCGGGGTGCTGCCGCCGATGGGC
GAGGACGAGGCCCTGGAGGCGGCAGCGCTTGCTTCCATCGAGGGCGGTTTCGACCCCCGCGACTGGGGGCGGCGGCCGTT
TCGCGCCCCCCACCACTCGGCTTCAGCGGCGGCGCTGGTCGGTGGCGGGGCGATTCCCCGCCCCGGAGAAATCTCGCTCG
CCCATCACGGCGTGCTGTTCCTCGACGAGCTGCCCGAGTTCGACCGCCGCGTCCTCGAGGCGCTGCGCGAGCCGCTCGAA
AGCGGCACGGTCACCGTGTCGCGGGCGCGCCGGCGGGCCGAGTTCCCGGCCCGCTTCCAGCTCGTCGCGGCGATGAATCC
CTGCCCCTGCGGCCATGCCGGCGACCCGCGCCGGGCCTGCCGGTGCACGCCCGATCAGGTCGCGCGCTACCGGGGGCGAT
TGTCCGGGCCCTTGCTCGACCGCATCGATCTCACCGTCGAAGTGCCGGCGATCGACACCGAGGCCCTGCTCGGCAGTCCG
GCGGGGGAACGCTCGGCGGTGGTGCGGGCGCGGGTGCAGGCGGCGCGGGAGCGCCAGCTTGCCCGCCAGGGCGGGCCGAA
CGCGCACCTGGGGCCGGCCGAGGTGGTGCGCCACTGCACCCCCGATGACCGCGGCGAGGCCCTGCTGCGCCAGGCGATGA
AACAGCTCGCGCTGTCGGCGAGGGCGTATCATCGCGTCCTTCGGGTGGCGCGCACGCTGGCCGATCTGTCCGGGTGCGAG
CGCCCCGGCGCGGCCCAGGTCGCCGAGGCGGTCCAGTACCGGCGCAGCCTCGATGCCCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4BRZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.629

99.2

0.532
  comM Vibrio campbellii strain DS40M4

53.213

99.6

0.53
  comM Haemophilus influenzae Rd KW20

52.191

100

0.524
  comM Glaesserella parasuis strain SC1401

51.102

99.8

0.51
  comM Legionella pneumophila str. Paris

49.2

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.2

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.488

100

0.452

Multiple sequence alignment