Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C9I28_RS06145 Genome accession   NZ_CP028324
Coordinates   1400204..1401718 (-) Length   504 a.a.
NCBI ID   WP_107140696.1    Uniprot ID   A0A2R4C6W8
Organism   Pseudoduganella armeniaca strain ZMN-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1395204..1406718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I28_RS06135 (C9I28_06135) - 1399220..1399570 (-) 351 WP_107140694.1 DUF1840 domain-containing protein -
  C9I28_RS06140 (C9I28_06140) - 1399647..1400150 (-) 504 WP_107140695.1 hypothetical protein -
  C9I28_RS06145 (C9I28_06145) comM 1400204..1401718 (-) 1515 WP_107140696.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C9I28_RS27960 - 1401978..1402673 (+) 696 WP_181259315.1 hypothetical protein -
  C9I28_RS29585 (C9I28_06155) - 1402705..1402791 (-) 87 Protein_1220 magnesium chelatase subunit ChlI -
  C9I28_RS06160 (C9I28_06160) - 1402877..1403980 (-) 1104 WP_107144390.1 PEP-CTERM sorting domain-containing protein -
  C9I28_RS06165 (C9I28_06165) - 1404128..1404382 (-) 255 WP_107140698.1 accessory factor UbiK family protein -
  C9I28_RS06170 (C9I28_06170) - 1404602..1405357 (+) 756 WP_107140699.1 TorF family putative porin -
  C9I28_RS06175 (C9I28_06175) - 1405370..1405708 (+) 339 WP_107140700.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54069.03 Da        Isoelectric Point: 9.1041

>NTDB_id=284105 C9I28_RS06145 WP_107140696.1 1400204..1401718(-) (comM) [Pseudoduganella armeniaca strain ZMN-3]
MSLAVVKSRALTGMEAPSVSVEVHLANGLPAFHIVGLAETEVKEARDRVRAAILTAGFDMPQRRITVSLAPADLPKESGR
FDLPIALGILAASGQIPAPPLARYEFAGELSLTGALRPIRGALAMTFAVQRSAGQGGAFVLPCANADEAALVADVAIYPA
ASLLEVCNHFRAADDTLRLSRHRPSPAPAVTTYPDFADVKGQQRARRALEVAAAGGHSVLLLGPPGAGKTMLASRFTGIL
PPMTDDEALEAAAVQSLTSSFALARWKQRPFRSPHHTSSAVALVGGGSVPRPGEISLAHCGVLFLDELPEFERRVLEVLR
EPLESGHVTISRAARQADFPARFQLIAAMNPCPCGFLGHPAAQCRCTPEAVARYQGRISGPLLDRIDIQLEVGPVSPETL
LSDAAGEPSSAIAARVEDALRRQLARQRKNNSHLSAREIDRWCKTDRAGQDLLHKAMLQFHWSARAYHRVLRVARTIADL
AGAATINERHVAEAIQFRRSLRQS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=284105 C9I28_RS06145 WP_107140696.1 1400204..1401718(-) (comM) [Pseudoduganella armeniaca strain ZMN-3]
ATGAGCCTTGCCGTCGTGAAAAGCCGTGCCCTGACGGGCATGGAAGCGCCGTCGGTCAGCGTCGAGGTTCACCTGGCCAA
CGGCTTGCCGGCCTTTCACATCGTGGGGCTGGCCGAAACGGAGGTGAAGGAGGCGCGCGACCGGGTGCGGGCCGCCATCC
TGACCGCCGGCTTCGACATGCCGCAGCGCCGCATCACCGTCAGCCTGGCGCCGGCCGACCTGCCAAAGGAATCCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCGTCCGGCCAGATTCCCGCGCCGCCGCTGGCGCGCTATGAATTCGC
CGGCGAGTTGTCGTTGACCGGAGCATTGCGCCCGATCCGGGGCGCGCTGGCCATGACGTTCGCGGTCCAGCGCAGCGCCG
GCCAGGGCGGCGCCTTCGTGCTGCCGTGCGCCAACGCCGACGAAGCGGCATTGGTGGCGGACGTCGCGATCTACCCGGCC
GCCAGCCTGCTCGAGGTCTGCAATCATTTTCGCGCCGCCGATGACACGCTGCGGCTGTCTCGTCACCGGCCCAGTCCGGC
GCCGGCCGTCACCACGTACCCGGACTTTGCCGACGTGAAGGGCCAGCAGCGCGCGCGTCGGGCGCTGGAGGTGGCGGCAG
CCGGCGGTCATAGCGTCTTGCTGCTGGGCCCGCCCGGCGCCGGCAAGACGATGCTGGCGTCGCGCTTCACCGGCATCCTG
CCGCCGATGACGGATGACGAAGCACTGGAGGCAGCGGCGGTGCAGTCGCTGACGAGTTCGTTCGCGCTGGCGCGCTGGAA
GCAGCGGCCGTTCCGTTCACCGCACCATACGTCGTCGGCGGTGGCATTGGTTGGCGGCGGCAGCGTCCCCCGCCCCGGCG
AGATTTCCCTGGCCCACTGCGGCGTGCTGTTCCTGGACGAGCTGCCGGAATTCGAGCGGCGCGTGCTGGAGGTACTGCGC
GAGCCGCTCGAATCAGGCCACGTGACGATTTCGCGGGCGGCGCGCCAGGCCGATTTCCCGGCCCGCTTCCAGTTGATCGC
CGCCATGAATCCCTGCCCGTGCGGCTTTCTCGGCCATCCGGCGGCGCAGTGCCGCTGCACGCCGGAGGCGGTGGCGCGCT
ACCAGGGCCGCATCTCCGGCCCGCTGCTCGATCGCATCGACATCCAGCTGGAGGTCGGTCCCGTCAGCCCGGAAACGCTG
CTGAGCGACGCGGCTGGCGAGCCGTCCAGCGCAATCGCCGCCCGGGTCGAGGACGCTCTGCGGCGCCAGCTGGCACGCCA
GCGCAAGAACAACAGCCACTTGAGCGCGCGCGAGATCGACCGCTGGTGCAAGACGGATCGCGCCGGCCAGGACCTGCTGC
ACAAGGCGATGCTGCAATTTCACTGGTCGGCGCGCGCCTACCACCGCGTGTTGCGCGTGGCGCGAACGATTGCGGACCTG
GCCGGCGCCGCCACGATCAACGAACGGCACGTGGCGGAAGCCATCCAGTTCCGCCGTTCGTTGCGGCAATCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-398)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4C6W8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.652

100

0.532
  comM Vibrio cholerae strain A1552

52.063

100

0.526
  comM Glaesserella parasuis strain SC1401

51.976

100

0.522
  comM Haemophilus influenzae Rd KW20

50.884

100

0.514
  comM Legionella pneumophila str. Paris

49.307

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.307

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.401

100

0.46

Multiple sequence alignment