Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C7M51_RS16190 Genome accession   NZ_CP028271
Coordinates   3502807..3504327 (+) Length   506 a.a.
NCBI ID   WP_160622665.1    Uniprot ID   A0A6P1Q4N9
Organism   Mixta intestinalis strain SRCM103226     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3497807..3509327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M51_RS16170 (C7M51_03229) ilvE 3499372..3500301 (-) 930 WP_160622662.1 branched-chain-amino-acid transaminase -
  C7M51_RS16175 (C7M51_03230) ilvM 3500320..3500577 (-) 258 WP_160622663.1 acetolactate synthase 2 small subunit -
  C7M51_RS16180 (C7M51_03231) ilvG 3500574..3502220 (-) 1647 WP_160622664.1 acetolactate synthase 2 catalytic subunit -
  C7M51_RS16185 ilvL 3502370..3502468 (-) 99 WP_071883719.1 ilv operon leader peptide -
  C7M51_RS16190 (C7M51_03232) comM 3502807..3504327 (+) 1521 WP_160622665.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C7M51_RS16195 (C7M51_03233) - 3504385..3504723 (-) 339 WP_160622666.1 DUF413 domain-containing protein -
  C7M51_RS16200 (C7M51_03234) hdfR 3504845..3505672 (+) 828 WP_160622667.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54498.86 Da        Isoelectric Point: 8.8150

>NTDB_id=283933 C7M51_RS16190 WP_160622665.1 3502807..3504327(+) (comM) [Mixta intestinalis strain SRCM103226]
MALSHVATRAALGVKAPLVTVEVHISNGLPGLSLVGLAETTVKEARDRVRSAILNSGFTFPAKRITVNLAPADLPKEGGR
FDLPIAIAILAASEQLPEAKLAQFEFLGELALSGALRGVQGAIPAAMAASDAGRTLIVPAENGNDVGLVKQGESLIASNL
PEVCAFLTAQRSLASGCADLPDDEAKKEDLSDIVGQQQGKRALEVSAAGGHNLLLIGPPGTGKTMLAMRLTGLLPPLSDR
EALECATIASLINRGGVHKQWRKRPFRIPHHSSTLYALTGGGAIPQPGEITLAHNGVLFLDELPEFSRKTLDALREPLET
GEITISRTRAKVTWPARFQLIAAMNPSPGGHYEGKHNRSTPLQTLRYLGRLSGPFLDRFDLSLEIPLLPAGMLSQPSKGA
EQSAQVRLRVLKARERQLARQGKINALLDNREVQQWCALSAADAEWLESILITLGLSVRAWQRLLKVSRTIADLAEEETL
TRTHLLEALSYRGMDRMLAHLHKNLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=283933 C7M51_RS16190 WP_160622665.1 3502807..3504327(+) (comM) [Mixta intestinalis strain SRCM103226]
ATGGCTTTATCCCATGTAGCTACGCGTGCCGCCCTTGGCGTCAAAGCGCCGCTGGTTACGGTTGAAGTTCACATAAGCAA
CGGATTGCCGGGCCTTTCACTGGTGGGATTAGCTGAAACCACGGTAAAAGAGGCTCGTGACCGAGTACGCAGCGCTATTC
TGAATAGCGGTTTTACCTTTCCTGCGAAACGCATTACCGTCAATCTGGCACCTGCCGATCTGCCCAAGGAAGGTGGACGT
TTCGATCTGCCTATTGCCATTGCTATTCTCGCTGCCTCAGAGCAGCTTCCTGAAGCCAAACTGGCGCAGTTTGAATTCCT
GGGTGAGCTTGCTCTAAGCGGGGCCTTAAGGGGTGTACAGGGCGCTATTCCGGCTGCGATGGCGGCAAGCGATGCAGGAA
GGACGCTGATTGTACCGGCAGAAAATGGTAACGATGTTGGCCTGGTTAAACAGGGCGAATCACTAATCGCCAGTAATCTT
CCAGAAGTATGTGCTTTCCTGACGGCTCAACGATCGCTTGCGTCTGGTTGCGCAGATTTGCCAGATGATGAAGCGAAAAA
GGAAGATTTAAGCGATATCGTCGGACAGCAACAGGGTAAGCGCGCTCTGGAAGTATCCGCTGCGGGAGGACACAATCTAC
TGCTTATTGGTCCACCCGGCACAGGAAAAACTATGCTGGCGATGCGCCTGACTGGCCTGTTACCGCCTCTGAGCGATCGT
GAAGCGCTGGAGTGCGCCACCATTGCCAGCCTGATTAATCGCGGAGGCGTACATAAACAATGGCGAAAACGCCCTTTTCG
CATCCCCCACCATAGTTCCACGCTCTATGCGCTAACAGGCGGCGGCGCTATCCCCCAGCCGGGTGAGATTACGCTGGCGC
ACAATGGTGTTCTGTTTTTGGATGAGCTGCCTGAATTCAGCCGAAAAACTCTGGATGCATTGCGTGAACCACTGGAAACG
GGGGAAATTACGATCTCTCGTACCAGAGCAAAAGTTACCTGGCCTGCGCGCTTTCAGCTTATCGCCGCGATGAATCCCAG
TCCTGGCGGGCATTATGAAGGTAAACATAATCGCAGTACGCCGTTGCAGACATTACGTTACCTTGGCCGTCTGTCGGGTC
CGTTTCTGGACCGTTTCGATCTCTCTCTGGAGATCCCACTATTGCCTGCCGGTATGCTTAGTCAGCCCTCAAAGGGGGCT
GAACAGAGTGCTCAAGTGCGACTAAGGGTGCTAAAAGCGCGGGAACGCCAGCTGGCGCGACAGGGAAAGATTAATGCGCT
ATTAGATAACCGTGAAGTACAACAATGGTGCGCGCTTTCTGCGGCAGATGCTGAGTGGCTTGAATCGATACTGATTACGC
TGGGACTTTCAGTCAGAGCATGGCAACGACTGCTAAAGGTGTCACGGACTATTGCCGATCTGGCGGAAGAGGAAACGCTG
ACGCGAACGCATCTGCTTGAAGCGCTAAGCTATCGGGGTATGGACCGAATGTTGGCTCATCTACATAAAAACCTGGAGTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1Q4N9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

61.829

99.407

0.615
  comM Vibrio campbellii strain DS40M4

60.355

100

0.605
  comM Glaesserella parasuis strain SC1401

60.039

100

0.603
  comM Haemophilus influenzae Rd KW20

59.881

100

0.599
  comM Legionella pneumophila str. Paris

49.4

98.814

0.488
  comM Legionella pneumophila strain ERS1305867

49.4

98.814

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433

Multiple sequence alignment