Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C7M51_RS15385 Genome accession   NZ_CP028271
Coordinates   3325806..3326351 (-) Length   181 a.a.
NCBI ID   WP_160622542.1    Uniprot ID   A0A6P1Q3F6
Organism   Mixta intestinalis strain SRCM103226     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3320806..3331351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M51_RS15370 (C7M51_03069) - 3321889..3322287 (+) 399 WP_160622539.1 transposase -
  C7M51_RS15375 (C7M51_03070) - 3323509..3325056 (-) 1548 WP_160622540.1 methyl-accepting chemotaxis protein -
  C7M51_RS15380 (C7M51_03071) - 3325400..3325699 (+) 300 WP_160622541.1 hypothetical protein -
  C7M51_RS15385 (C7M51_03072) ssb 3325806..3326351 (-) 546 WP_160622542.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C7M51_RS15390 (C7M51_03073) uvrA 3326577..3329408 (+) 2832 WP_160622543.1 excinuclease ABC subunit UvrA -
  C7M51_RS15395 (C7M51_03074) - 3329704..3330768 (+) 1065 WP_160622544.1 NAD(P)-dependent alcohol dehydrogenase -
  C7M51_RS15400 (C7M51_03075) - 3330806..3331144 (-) 339 WP_160622545.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19241.16 Da        Isoelectric Point: 5.2456

>NTDB_id=283931 C7M51_RS15385 WP_160622542.1 3325806..3326351(-) (ssb) [Mixta intestinalis strain SRCM103226]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQERYTTEVVVNVGGTMQMLGGRQNGGAGGQASGGMGGGNNSGWGQPQQPQGGNQFSGGGQQQAPAR
PQQSAPASSEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=283931 C7M51_RS15385 WP_160622542.1 3325806..3326351(-) (ssb) [Mixta intestinalis strain SRCM103226]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGTTATATGCCGAATGG
TGGAGCCGTAGCGAACATTACGCTGGCTACCTCTGAAAGCTGGCGTGACAAGCAGACCGGAGAGACCAAAGAGAAAACGG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCAGGCGAATACCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGTTCTCTGCAAACGCGCAAATGGCAGGATCAGAGCGGCCAGGAACGCTATACCACGGAAGTGGTGGTAAACGTTGG
TGGTACTATGCAGATGCTGGGCGGTCGTCAGAACGGCGGCGCGGGCGGTCAGGCCAGTGGCGGCATGGGCGGCGGCAACA
ACAGTGGCTGGGGCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGTGGACAGCAGCAGGCTCCTGCTCGC
CCGCAGCAGAGCGCGCCAGCCAGCAGCGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1Q3F6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.77

100

0.746
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.58
  ssb Neisseria meningitidis MC58

45.455

97.238

0.442
  ssb Neisseria gonorrhoeae MS11

45.455

97.238

0.442
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.066

100

0.365

Multiple sequence alignment