Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C4X49_RS01165 Genome accession   NZ_CP028138
Coordinates   237698..239185 (-) Length   495 a.a.
NCBI ID   WP_000010455.1    Uniprot ID   A0A427R1K7
Organism   Acinetobacter baumannii strain NCIMB 8209     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 232698..244185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4X49_RS19255 - 233385..233555 (+) 171 WP_165383083.1 hypothetical protein -
  C4X49_RS01145 (C4X49_01140) - 233612..234424 (+) 813 WP_000975212.1 TorF family putative porin -
  C4X49_RS01150 (C4X49_01145) - 234467..235345 (-) 879 WP_130089710.1 dihydrodipicolinate synthase family protein -
  C4X49_RS01155 (C4X49_01150) - 235361..236137 (-) 777 WP_130089711.1 aldolase -
  C4X49_RS01160 (C4X49_01155) - 236249..237683 (+) 1435 Protein_222 PLP-dependent aminotransferase family protein -
  C4X49_RS01165 (C4X49_01160) comM 237698..239185 (-) 1488 WP_000010455.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C4X49_RS01170 (C4X49_01165) - 239251..239478 (-) 228 WP_000894500.1 accessory factor UbiK family protein -
  C4X49_RS01175 (C4X49_01170) glnK 239758..240096 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  C4X49_RS01180 (C4X49_01175) - 240154..241551 (+) 1398 WP_000738520.1 ammonium transporter -
  C4X49_RS01185 (C4X49_01180) nrdR 241710..242168 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  C4X49_RS01190 (C4X49_01185) ribD 242184..243269 (+) 1086 WP_130089712.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54497.38 Da        Isoelectric Point: 7.2753

>NTDB_id=281517 C4X49_RS01165 WP_000010455.1 237698..239185(-) (comM) [Acinetobacter baumannii strain NCIMB 8209]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=281517 C4X49_RS01165 WP_000010455.1 237698..239185(-) (comM) [Acinetobacter baumannii strain NCIMB 8209]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGCGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCCGTATCAGGCGCTTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCATGCGCAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGACCTTGCAGATGTTAAAGGTCAGCTACGGCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACAACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427R1K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471

Multiple sequence alignment