Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C7U63_RS14700 Genome accession   NZ_CP028133
Coordinates   3177981..3179495 (+) Length   504 a.a.
NCBI ID   WP_118854387.1    Uniprot ID   -
Organism   Aeromonas veronii strain 17ISAe     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3172981..3184495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7U63_RS14680 (C7U63_14665) - 3174718..3175662 (-) 945 WP_107683194.1 branched-chain amino acid transaminase -
  C7U63_RS14685 (C7U63_14670) ilvM 3175675..3175953 (-) 279 WP_107683193.1 acetolactate synthase 2 small subunit -
  C7U63_RS14690 (C7U63_14675) ilvG 3175950..3177596 (-) 1647 WP_107683192.1 acetolactate synthase 2 catalytic subunit -
  C7U63_RS14700 (C7U63_14685) comM 3177981..3179495 (+) 1515 WP_118854387.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C7U63_RS14705 (C7U63_14690) - 3179623..3180522 (+) 900 WP_043823224.1 acyltransferase -
  C7U63_RS14710 (C7U63_14695) - 3180529..3181494 (+) 966 WP_118854388.1 acyltransferase -
  C7U63_RS14715 (C7U63_14700) - 3181419..3181925 (-) 507 WP_118854389.1 DUF523 domain-containing protein -
  C7U63_RS14720 (C7U63_14705) - 3181922..3182572 (-) 651 WP_005339607.1 NUDIX hydrolase -
  C7U63_RS14725 (C7U63_14710) - 3182647..3183282 (+) 636 WP_118854390.1 nicotinamidase -
  C7U63_RS14730 (C7U63_14715) pncB 3183284..3184462 (+) 1179 WP_005342020.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54564.50 Da        Isoelectric Point: 7.6884

>NTDB_id=281480 C7U63_RS14700 WP_118854387.1 3177981..3179495(+) (comM) [Aeromonas veronii strain 17ISAe]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLNEQ
EAQQTAAIHSIGGLTLRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRGRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=281480 C7U63_RS14700 WP_118854387.1 3177981..3179495(+) (comM) [Aeromonas veronii strain 17ISAe]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACGGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCTCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGAATTCTCGCAGCTTCAAAACAAATACCTGCAAAATACCTGCTTGATCACGAATTTTT
GGGGGAGTTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTGCTACCCGCCGTACTCGCCTGCCGGGATGCGGGGC
GTACCCTGCTGGTACCGCGGGAGAACGGCCCGGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAGCGCGGAGAGCCTGCCAGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGTGCACTGGAGATTGCCGCCGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGATTGCCCGGCATTCTGCCGCCGCTGAACGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCTGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACACCCCACCACAGCGCCTCGGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCAAGGCCCGGCGAAATATCGTTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTCGATTTCCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGTGGCCACTATGGCGATGGCCAAACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGA
GAGTCGAGCCAGCAGATCCGCGGTCGAGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAATCT
GCTGGATAGTCGTGAAATCGAAGATATTTGCCGATTATCGCCGCAAGATGCCGAATTTTTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATTTTGCGGGTGTCGCGTACCATCGCCGATCTGGCCGGACAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCACTCGGTTACAGGGCCATGGACAGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.595

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.595

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464

Multiple sequence alignment