Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C7S18_RS18980 Genome accession   NZ_CP027860
Coordinates   4921221..4922618 (-) Length   465 a.a.
NCBI ID   WP_106893042.1    Uniprot ID   A0A2P1PWA1
Organism   Ahniella affigens strain D13     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4916221..4927618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S18_RS18950 (C7S18_18940) - 4916251..4917513 (-) 1263 WP_106893037.1 DUF6596 domain-containing protein -
  C7S18_RS18955 (C7S18_18945) - 4917570..4917932 (-) 363 WP_106894107.1 YciI family protein -
  C7S18_RS18960 (C7S18_18950) - 4918150..4918722 (+) 573 WP_106893038.1 Pycsar system effector family protein -
  C7S18_RS18965 (C7S18_18955) - 4919145..4919588 (-) 444 WP_106893039.1 pilin -
  C7S18_RS18970 (C7S18_18960) pilE 4919997..4920428 (-) 432 WP_106893040.1 pilin Machinery gene
  C7S18_RS18975 (C7S18_18965) - 4920499..4921218 (-) 720 WP_106893041.1 hypothetical protein -
  C7S18_RS18980 (C7S18_18970) pilR 4921221..4922618 (-) 1398 WP_106893042.1 sigma-54 dependent transcriptional regulator Regulator
  C7S18_RS18985 (C7S18_18975) - 4922735..4924360 (-) 1626 WP_170113359.1 ATP-binding protein -
  C7S18_RS18990 (C7S18_18980) - 4924537..4925316 (-) 780 WP_106893044.1 AMP nucleosidase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 50473.88 Da        Isoelectric Point: 6.1089

>NTDB_id=281054 C7S18_RS18980 WP_106893042.1 4921221..4922618(-) (pilR) [Ahniella affigens strain D13]
MARQNALVIDDEPDIRELLVLTLTRMGLAVDTAGTVKEALERLAQHRYDLCFTDMRLPDGSGQEIIEFVAKHQPSMPIAM
ITAHGNMDAAVTALKAGAFDFVTKPVDLSVLRRMVNSALKLGEPKKPDAGRSPAATGVAQGPVASRLIGQSAAMQQLKAT
VAKVARSQAPVHIFGESGTGKELVARLIHEQGPRAGGPFLAVNCGAIPTELMESEFFGHKKGSFTGAVSDKDGMFVAANG
GTLFLDEVADLPIHMQVKLLRVIQEKAVRPVGSTAEATIDVRILSATHKHLEHLVAEGRFRQDLYYRINVIELRVPALRE
RGEDIPILANAYLARMAADWHLDRIDLDSSALDELSRYDFPGNVRELENILERAVALCDEHTIRAADLGIGANRSDVAPP
RLLEPVEDEGDPDGDPADLEGYVASIERKAIIEALAATQNNKTKAAERLGISFRALRYKLKKLGV

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=281054 C7S18_RS18980 WP_106893042.1 4921221..4922618(-) (pilR) [Ahniella affigens strain D13]
ATGGCACGACAAAACGCACTGGTGATCGACGACGAGCCAGACATTCGCGAACTTCTGGTCCTGACCCTGACCCGGATGGG
CTTGGCGGTCGACACGGCGGGCACCGTCAAAGAGGCCCTGGAACGCCTGGCCCAGCATCGCTACGACCTGTGTTTTACCG
ACATGCGCCTCCCCGATGGCAGCGGTCAGGAAATCATTGAATTCGTTGCGAAACATCAGCCCAGCATGCCGATCGCCATG
ATCACCGCGCACGGCAACATGGATGCCGCCGTCACGGCGCTGAAGGCCGGCGCATTCGATTTTGTAACAAAACCTGTCGA
CTTGAGTGTCTTGCGGCGCATGGTCAACAGCGCGCTCAAGCTTGGCGAGCCGAAAAAACCGGACGCCGGTCGCAGTCCTG
CGGCGACAGGCGTTGCGCAAGGTCCGGTGGCAAGTCGACTCATTGGCCAGTCTGCAGCGATGCAACAACTCAAGGCCACC
GTGGCCAAGGTGGCGCGGAGCCAAGCGCCCGTCCATATTTTTGGCGAGTCGGGGACAGGCAAGGAATTGGTGGCCCGGCT
GATTCATGAACAAGGCCCGCGTGCCGGCGGCCCCTTTCTGGCCGTCAACTGCGGCGCCATCCCAACCGAACTGATGGAAA
GTGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCCGTCAGCGACAAGGACGGTATGTTCGTCGCGGCGAACGGC
GGTACCCTGTTCCTGGACGAGGTTGCCGATTTGCCTATTCATATGCAGGTCAAACTGCTGCGCGTGATCCAGGAAAAGGC
GGTGCGGCCGGTTGGATCGACGGCCGAGGCGACGATTGATGTGCGCATTCTGAGTGCCACGCATAAACATCTGGAACATC
TGGTTGCCGAGGGCCGATTTCGCCAAGACCTTTATTACCGCATCAACGTGATCGAGCTCCGGGTGCCTGCACTCCGCGAA
CGCGGCGAAGATATCCCGATCCTGGCCAACGCCTACCTGGCGCGGATGGCTGCAGACTGGCACCTCGATCGGATCGATCT
CGACAGCAGCGCGCTGGACGAACTCAGCCGCTACGACTTCCCTGGCAATGTTCGCGAGCTCGAGAACATTCTGGAACGGG
CCGTGGCGCTGTGCGACGAACATACGATTCGCGCCGCCGATTTGGGAATCGGGGCGAACCGCTCCGATGTCGCCCCGCCG
CGGCTTCTGGAACCGGTCGAGGACGAAGGTGACCCGGACGGCGACCCGGCTGATCTGGAAGGCTACGTTGCCAGCATCGA
GCGTAAGGCCATAATTGAGGCCTTGGCAGCAACCCAGAACAACAAAACGAAAGCGGCTGAGCGGCTGGGAATCTCGTTCC
GAGCGCTGCGCTACAAGCTCAAGAAACTTGGAGTCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(424-463)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(147-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P1PWA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.569

100

0.581
  pilR Acinetobacter baumannii strain A118

46.584

100

0.484
  luxO Vibrio cholerae strain A1552

36.422

99.785

0.363

Multiple sequence alignment