Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   C7J89_RS08170 Genome accession   NZ_CP027846
Coordinates   1636748..1637056 (+) Length   102 a.a.
NCBI ID   WP_103295107.1    Uniprot ID   -
Organism   Staphylococcus kloosii strain ATCC 43959     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631748..1642056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7J89_RS08140 (C7J89_08135) - 1632536..1632736 (+) 201 WP_103295103.1 YqgQ family protein -
  C7J89_RS08145 (C7J89_08140) - 1632737..1633723 (+) 987 WP_103295104.1 glucokinase -
  C7J89_RS08150 (C7J89_08145) - 1633723..1634061 (+) 339 WP_061854584.1 MTH1187 family thiamine-binding protein -
  C7J89_RS08155 (C7J89_08150) - 1634048..1634671 (+) 624 WP_103295105.1 MBL fold metallo-hydrolase -
  C7J89_RS08160 (C7J89_08155) comGA 1634721..1635695 (+) 975 WP_103295106.1 competence type IV pilus ATPase ComGA Machinery gene
  C7J89_RS08165 (C7J89_08160) comGB 1635667..1636734 (+) 1068 WP_233432426.1 competence type IV pilus assembly protein ComGB -
  C7J89_RS08170 (C7J89_08165) comGC 1636748..1637056 (+) 309 WP_103295107.1 competence type IV pilus major pilin ComGC Machinery gene
  C7J89_RS08175 (C7J89_08170) comGD 1637037..1637477 (+) 441 WP_233432455.1 competence type IV pilus minor pilin ComGD -
  C7J89_RS08180 (C7J89_08175) - 1637464..1637751 (+) 288 WP_103295109.1 hypothetical protein -
  C7J89_RS08185 (C7J89_08180) comGF 1637735..1638157 (+) 423 WP_267895088.1 competence type IV pilus minor pilin ComGF -
  C7J89_RS08195 (C7J89_08190) - 1638325..1638837 (+) 513 WP_103295711.1 shikimate kinase -
  C7J89_RS08200 (C7J89_08195) gcvT 1639003..1640094 (+) 1092 WP_103295710.1 glycine cleavage system aminomethyltransferase GcvT -
  C7J89_RS08205 (C7J89_08200) gcvPA 1640114..1641466 (+) 1353 WP_103295709.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11279.35 Da        Isoelectric Point: 9.7129

>NTDB_id=280889 C7J89_RS08170 WP_103295107.1 1636748..1637056(+) (comGC) [Staphylococcus kloosii strain ATCC 43959]
MNKIKHFKAFTLIEMLLVLLIISLLLVLIIPNISKQSKHIQTTGCKAQLKLIDSQIQAYTLKFGQPPNTIDNLVSEGFIK
DEQKSCKNGQTIAINNGEAVAS

Nucleotide


Download         Length: 309 bp        

>NTDB_id=280889 C7J89_RS08170 WP_103295107.1 1636748..1637056(+) (comGC) [Staphylococcus kloosii strain ATCC 43959]
ATGAACAAAATTAAACATTTTAAAGCATTTACTTTAATAGAAATGCTTTTAGTATTACTCATAATTAGTCTACTTTTAGT
ATTAATAATCCCTAATATTTCAAAACAATCTAAACATATTCAGACAACAGGATGTAAAGCACAGCTAAAACTTATAGATA
GTCAAATTCAAGCTTATACATTGAAATTTGGACAACCACCTAACACTATAGATAATCTAGTAAGCGAGGGATTCATCAAG
GATGAACAAAAATCTTGTAAAAATGGTCAAACAATAGCAATAAACAATGGTGAGGCTGTTGCAAGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

64.646

97.059

0.627
  comGC Staphylococcus aureus N315

64.646

97.059

0.627
  comYC Streptococcus gordonii str. Challis substr. CH1

40.952

100

0.422
  comGC Bacillus subtilis subsp. subtilis str. 168

44.565

90.196

0.402
  comYC Streptococcus mutans UA140

47.059

83.333

0.392
  comYC Streptococcus mutans UA159

47.059

83.333

0.392
  comGC/cglC Streptococcus mitis SK321

41.111

88.235

0.363

Multiple sequence alignment