Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VC0395_RS12920 Genome accession   NC_009457
Coordinates   1619555..1619866 (-) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae O395     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1614555..1624866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC0395_RS12895 (VC0395_A1502) lapB 1614749..1615918 (-) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -
  VC0395_RS12900 (VC0395_A1503) - 1615930..1616211 (-) 282 WP_000691492.1 LapA family protein -
  VC0395_RS12905 (VC0395_A1504) ihfB 1616350..1616628 (-) 279 WP_000167341.1 integration host factor subunit beta -
  VC0395_RS12910 (VC0395_A1505) rpsA 1616916..1618586 (-) 1671 WP_000140318.1 30S ribosomal protein S1 -
  VC0395_RS12915 (VC0395_A1506) cmk 1618695..1619372 (-) 678 WP_000094752.1 (d)CMP kinase -
  VC0395_RS12920 (VC0395_A1507) comEA 1619555..1619866 (-) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  VC0395_RS12925 (VC0395_A1508) ppiD 1620001..1621860 (-) 1860 WP_000969331.1 peptidylprolyl isomerase -
  VC0395_RS12930 (VC0395_A1509) - 1622013..1622285 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  VC0395_RS12935 (VC0395_A1510) lon 1622469..1624829 (-) 2361 WP_001047611.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=28083 VC0395_RS12920 WP_001166105.1 1619555..1619866(-) (comEA) [Vibrio cholerae O395]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=28083 VC0395_RS12920 WP_001166105.1 1619555..1619866(-) (comEA) [Vibrio cholerae O395]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437

Multiple sequence alignment