Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C7H73_RS03005 Genome accession   NZ_CP027792
Coordinates   664376..664927 (+) Length   183 a.a.
NCBI ID   WP_106845304.1    Uniprot ID   A0A2P1NI61
Organism   Pulveribacter suum strain SC2-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 659376..669927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H73_RS02985 (C7H73_02980) sucD 659645..660538 (-) 894 WP_106845301.1 succinate--CoA ligase subunit alpha -
  C7H73_RS02990 (C7H73_02985) sucC 660557..661717 (-) 1161 WP_106845302.1 ADP-forming succinate--CoA ligase subunit beta -
  C7H73_RS02995 (C7H73_02990) argC 661936..662877 (+) 942 WP_106845303.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  C7H73_RS03000 (C7H73_02995) - 662995..664173 (+) 1179 WP_106847505.1 MFS transporter -
  C7H73_RS03005 (C7H73_03000) ssb 664376..664927 (+) 552 WP_106845304.1 single-stranded DNA-binding protein Machinery gene
  C7H73_RS03010 (C7H73_03005) corA 665198..666184 (-) 987 WP_106845305.1 magnesium/cobalt transporter CorA -
  C7H73_RS03015 (C7H73_03010) - 666409..667173 (-) 765 WP_106845306.1 uracil-DNA glycosylase family protein -
  C7H73_RS03020 (C7H73_03015) rimI 667170..667652 (-) 483 WP_106845307.1 ribosomal protein S18-alanine N-acetyltransferase -
  C7H73_RS03025 (C7H73_03020) tsaB 667649..668362 (-) 714 WP_106845308.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  C7H73_RS03030 (C7H73_03025) dacB 668426..669892 (+) 1467 WP_106845309.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19619.79 Da        Isoelectric Point: 5.9604

>NTDB_id=280787 C7H73_RS03005 WP_106845304.1 664376..664927(+) (ssb) [Pulveribacter suum strain SC2-7]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLKKGSQVYVEG
SLRTRKWTDQSGQERYTTEIRADAMQMLGSRQGMGGQGGGYDESFGGDSGGGYEAPRRPPAPAPAPARSPAPAAPAARPA
PAPMAPPPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=280787 C7H73_RS03005 WP_106845304.1 664376..664927(+) (ssb) [Pulveribacter suum strain SC2-7]
ATGGCATCCGTCAACAAGGTCATCATCGTGGGCAACCTGGGCCGCGACCCGGAGATGCGCACCTTCCCCAGCGGCGACCA
GGTGGCCAACGTACGCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTCGGCCAGTACCTGAAAAAGGGCTCGCAGGTGTACGTGGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGAGCGGCCAGGAACGCTACACCACCGAAATCCGCGCCGATGCCATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGTGGGCAGGGTGGTGGCTATGACGAAAGCTTCGGCGGCGACAGCGGCGGCGGCTACG
AGGCCCCGCGCCGCCCCCCGGCACCTGCGCCCGCGCCTGCGCGCTCCCCGGCGCCTGCTGCCCCCGCGGCGCGCCCGGCA
CCGGCGCCCATGGCCCCGCCCCCGCGCGCGGCCTCGGGCTTTGACGACATGGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P1NI61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.323

100

0.53
  ssb Vibrio cholerae strain A1552

50.521

100

0.53
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.47
  ssb Neisseria meningitidis MC58

46.409

98.907

0.459

Multiple sequence alignment