Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C7H73_RS02310 Genome accession   NZ_CP027792
Coordinates   519858..521399 (-) Length   513 a.a.
NCBI ID   WP_106845184.1    Uniprot ID   A0A2P1NHT8
Organism   Pulveribacter suum strain SC2-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 514858..526399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H73_RS02290 (C7H73_02290) - 515646..517154 (+) 1509 WP_106845180.1 ATP-binding cassette domain-containing protein -
  C7H73_RS02295 (C7H73_02295) - 517195..517497 (+) 303 WP_106845181.1 type II toxin-antitoxin system MqsR family toxin -
  C7H73_RS02300 (C7H73_02300) - 517500..517901 (+) 402 WP_106845182.1 type II toxin-antitoxin system MqsA family antitoxin -
  C7H73_RS02305 (C7H73_02305) - 517942..519657 (-) 1716 WP_106845183.1 methyl-accepting chemotaxis protein -
  C7H73_RS02310 (C7H73_02310) comM 519858..521399 (-) 1542 WP_106845184.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C7H73_RS02315 (C7H73_02315) - 521550..521888 (+) 339 WP_106845185.1 P-II family nitrogen regulator -
  C7H73_RS02320 (C7H73_02320) - 521909..523210 (+) 1302 WP_227001480.1 ammonium transporter -
  C7H73_RS02325 (C7H73_02325) - 523230..524141 (+) 912 WP_106845186.1 SMP-30/gluconolactonase/LRE family protein -
  C7H73_RS02330 (C7H73_02330) glcE 524244..525353 (+) 1110 WP_106845187.1 glycolate oxidase subunit GlcE -
  C7H73_RS02335 (C7H73_02335) - 525357..526169 (+) 813 WP_106845188.1 YoaK family protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 53476.20 Da        Isoelectric Point: 8.8496

>NTDB_id=280785 C7H73_RS02310 WP_106845184.1 519858..521399(-) (comM) [Pulveribacter suum strain SC2-7]
MSLALVQSRALLGLAAPAVTVEVHLAGGLPSFTLVGLAEVEVKEARERVRSALQNAGLEFPSNKKITVNLAPADLPKDSG
RFDLPIALGLLAASGQIDAQQLAGWEFAGELSLSGELRPVRGALATALALRAQERPARMVLPLGSAQEAALVPGTGIYGA
RHLLDVVRQFLPARGGQDAADDGDGWQRMQPAPPPASPPGPDLADVKGQAAPKRALEIAAAGGHGLLLVGPPGSGKSMLA
QRFAGLLPPMDVQAALESAAIASLAGRFTPAQWMQRATASPHHTSSAVALVGGGSPPRPGEISLAHEGVLYLDEFPEFAR
SALEALREPLETGRIIIARAGQRAEFPARFQLIAAMNPCPCGFAGSAQRACRCTPDQVARYQGKLSGPLLDRIDLHVEVP
ALPAQELLHAPPGESSHAVRERVAAARQRALARQGKPNQALQGQEIDAHLALQDGAAQFLQNAAARLGWSARGTHRALKV
ARTIADLAGSDAVATAHVAEAVQYRRALGRAGI

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=280785 C7H73_RS02310 WP_106845184.1 519858..521399(-) (comM) [Pulveribacter suum strain SC2-7]
ATGAGCCTTGCCCTGGTGCAAAGCCGCGCCCTGCTGGGCCTGGCGGCGCCCGCCGTCACCGTCGAGGTCCACCTGGCCGG
GGGCCTGCCCAGCTTCACGCTGGTGGGTCTCGCGGAGGTCGAGGTGAAGGAGGCGCGCGAACGCGTGCGCTCGGCGCTGC
AGAACGCGGGGCTGGAATTTCCCTCGAACAAGAAAATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGATTCGGGC
CGCTTCGACCTGCCCATCGCCCTGGGCCTGCTGGCGGCCAGCGGCCAGATCGACGCGCAGCAGCTCGCTGGCTGGGAGTT
CGCCGGCGAGCTGTCGCTGTCGGGCGAGCTGCGCCCGGTGCGCGGCGCGCTGGCCACGGCCCTGGCGCTGCGCGCCCAGG
AGCGCCCGGCGCGCATGGTGCTGCCGCTGGGCAGCGCCCAGGAGGCCGCGCTGGTGCCCGGCACCGGCATCTACGGTGCG
CGCCACCTGCTGGACGTGGTGCGCCAGTTCCTGCCCGCGCGCGGCGGCCAGGACGCTGCGGACGACGGCGACGGCTGGCA
GCGCATGCAGCCCGCGCCGCCGCCCGCGTCCCCGCCCGGGCCCGACCTGGCCGACGTGAAGGGACAGGCCGCGCCCAAGC
GGGCGCTGGAGATCGCCGCTGCCGGTGGCCATGGCCTGTTGCTGGTCGGCCCGCCGGGCTCGGGCAAGTCCATGCTGGCC
CAGCGCTTTGCCGGGCTGCTGCCGCCCATGGACGTACAGGCGGCGCTGGAGAGCGCGGCCATCGCCAGCCTGGCCGGCCG
CTTCACCCCGGCGCAGTGGATGCAGCGCGCCACGGCCAGCCCGCACCACACCAGCAGCGCCGTGGCCCTGGTGGGCGGCG
GTTCGCCGCCGCGCCCGGGCGAGATCTCGCTGGCCCACGAGGGCGTTCTGTACCTGGACGAGTTCCCCGAGTTCGCCCGC
AGCGCCCTGGAGGCGCTGCGCGAGCCGCTGGAGACCGGCCGCATCATCATCGCCCGCGCCGGGCAGCGCGCCGAGTTTCC
TGCGCGCTTTCAGCTCATCGCCGCCATGAACCCCTGCCCCTGCGGCTTCGCGGGCAGCGCCCAGCGCGCCTGCCGCTGCA
CGCCCGACCAGGTGGCGCGCTACCAGGGCAAGCTGAGCGGCCCGCTGCTGGACCGCATCGACCTGCACGTGGAGGTGCCC
GCCCTGCCCGCGCAGGAACTGCTGCACGCCCCGCCCGGCGAGTCCAGCCACGCCGTGCGCGAGCGCGTCGCCGCCGCCCG
GCAGCGGGCGCTGGCGCGCCAGGGCAAGCCCAACCAGGCGCTGCAGGGCCAGGAGATCGACGCCCACCTGGCGCTGCAGG
ACGGCGCCGCGCAGTTCCTGCAGAACGCCGCGGCGCGCCTGGGCTGGTCGGCGCGTGGCACGCACCGGGCGCTGAAGGTG
GCGCGCACCATCGCCGACCTGGCCGGCAGCGATGCGGTCGCCACGGCCCACGTGGCCGAGGCGGTGCAGTACCGCCGGGC
GCTGGGCCGCGCTGGCATCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P1NHT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.969

99.025

0.515
  comM Glaesserella parasuis strain SC1401

51.473

99.22

0.511
  comM Vibrio campbellii strain DS40M4

51.282

98.83

0.507
  comM Haemophilus influenzae Rd KW20

51.181

99.025

0.507
  comM Legionella pneumophila str. Paris

47.885

100

0.485
  comM Legionella pneumophila strain ERS1305867

47.885

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.495

100

0.425

Multiple sequence alignment