Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DNO_RS00970 Genome accession   NC_009446
Coordinates   217988..219475 (-) Length   495 a.a.
NCBI ID   WP_011927950.1    Uniprot ID   A5EWI0
Organism   Dichelobacter nodosus VCS1703A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 212988..224475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNO_RS07225 - 213337..213588 (-) 252 WP_200902128.1 helix-turn-helix domain-containing protein -
  DNO_RS00955 (DNO_0200) - 213737..215290 (+) 1554 WP_011927947.1 AbgT family transporter -
  DNO_RS00960 (DNO_0201) pepT 215302..216522 (+) 1221 WP_011927948.1 peptidase T -
  DNO_RS07120 - 216576..216719 (-) 144 WP_161802450.1 hypothetical protein -
  DNO_RS00965 (DNO_0202) recF 216912..217982 (-) 1071 WP_011927949.1 DNA replication/repair protein RecF -
  DNO_RS00970 (DNO_0203) comM 217988..219475 (-) 1488 WP_011927950.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DNO_RS00975 (DNO_0204) - 219475..220218 (-) 744 WP_041729380.1 YggS family pyridoxal phosphate-dependent enzyme -
  DNO_RS00980 (DNO_0205) - 220292..220750 (-) 459 WP_041729382.1 FxsA family protein -
  DNO_RS00985 (DNO_0206) polA 220833..223538 (-) 2706 WP_011927953.1 DNA polymerase I -
  DNO_RS00990 (DNO_0207) purN 223664..224251 (+) 588 WP_011927954.1 phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53553.72 Da        Isoelectric Point: 8.1590

>NTDB_id=28046 DNO_RS00970 WP_011927950.1 217988..219475(-) (comM) [Dichelobacter nodosus VCS1703A]
MALATVYSRAPLAMKAPLVRVEIDLSAGLPAMTLVGLPEKAVKESKDRVRAAIINSGFSFPQKRITINLAPADLPKDGAQ
YDLAIALGILAASGQIPAHALQKTEWYGELALSGAVRAVRAILPCALAAAADGHQIIVPQENAAEAALIAVENVRSAVSL
ADIVAILQQRHSWQPIMATLPTLPHYPDFADVVGHHQAKRALLIAAAGGHHVLMSGSPGTGKSMLAQRFVGILPAMTRQE
AIESAAILSLSQHGFNVEHWRQRPFRAPHHSSSATALVGGGSLPKPGEISLAHHGVLFLDELPEFNRHVLEMLREPLENG
HISISRAAMKCDFPARFQLIAAMNPCPCGYYGDAEHHCTDTPEQIARYRQKISGPLLDRIDIHLTVARLTPKELRAQHHD
GDNTATLRAQASAAFERQIARQGKINALLSSRELDLYFHPEKSVLTLLDQAAEKMGLSMRGYHRVLKVARTIADLAESDA
VLPAHAAEALQYRVH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=28046 DNO_RS00970 WP_011927950.1 217988..219475(-) (comM) [Dichelobacter nodosus VCS1703A]
ATGGCGCTGGCAACCGTTTATTCTCGGGCACCATTGGCAATGAAAGCGCCGCTGGTACGCGTTGAAATTGATTTATCGGC
AGGATTGCCGGCGATGACGTTGGTCGGTTTGCCGGAAAAAGCGGTTAAAGAAAGTAAAGATCGCGTACGCGCTGCCATCA
TCAATAGCGGTTTTTCCTTTCCACAAAAACGCATCACCATTAATCTCGCGCCTGCCGATTTGCCCAAAGACGGCGCGCAA
TATGATCTTGCTATTGCGTTAGGTATTCTCGCCGCTTCCGGACAAATTCCAGCGCATGCTTTGCAAAAAACGGAATGGTA
CGGCGAATTAGCGCTTTCCGGCGCAGTGCGCGCGGTGCGCGCGATTTTGCCGTGTGCATTAGCGGCAGCAGCAGACGGTC
ATCAGATTATCGTGCCTCAAGAAAATGCGGCGGAAGCGGCGTTAATTGCCGTTGAAAATGTGCGCAGCGCGGTGAGTTTG
GCTGATATTGTTGCGATTTTGCAGCAACGCCATTCATGGCAACCGATTATGGCGACGCTTCCAACGTTACCGCATTATCC
GGATTTTGCTGATGTGGTCGGACATCATCAAGCTAAACGCGCTTTATTAATTGCCGCGGCAGGCGGTCATCATGTTTTAA
TGAGCGGGTCGCCGGGAACGGGAAAATCTATGTTGGCGCAACGATTTGTCGGTATTTTGCCGGCGATGACGCGTCAAGAA
GCGATTGAAAGCGCGGCGATTCTTTCGTTAAGTCAACATGGTTTTAATGTTGAACATTGGCGACAACGTCCTTTTCGTGC
GCCGCACCACAGCAGTTCTGCCACGGCTTTAGTCGGCGGCGGTTCTTTGCCCAAACCGGGGGAGATTTCTTTGGCGCATC
ACGGCGTTTTATTTTTAGATGAGTTGCCGGAATTTAACCGTCACGTTTTAGAAATGCTGCGTGAACCGTTAGAAAACGGT
CATATCAGTATTTCGCGCGCGGCGATGAAATGCGATTTTCCCGCGCGATTTCAATTAATTGCGGCGATGAATCCTTGCCC
CTGCGGTTATTATGGCGACGCCGAACATCATTGCACGGATACGCCGGAACAAATTGCGCGTTATCGGCAAAAAATCAGCG
GGCCGTTGCTCGATCGGATTGATATTCATCTGACGGTGGCGCGGTTGACGCCCAAAGAATTGCGCGCGCAGCATCACGAT
GGCGATAACACGGCAACGCTGCGAGCGCAAGCCAGTGCGGCATTTGAACGACAAATTGCGCGGCAGGGAAAAATCAATGC
GCTTTTGAGTAGCCGCGAATTGGATCTTTATTTTCACCCCGAAAAAAGCGTTTTAACGCTGCTCGATCAGGCGGCAGAAA
AAATGGGGTTATCGATGCGCGGTTATCATCGTGTTTTAAAAGTGGCGCGTACGATTGCCGATTTGGCAGAGAGTGATGCC
GTTTTGCCGGCGCACGCGGCAGAAGCGCTGCAATATCGTGTTCATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A5EWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.525

100

0.525
  comM Vibrio campbellii strain DS40M4

51.911

100

0.521
  comM Legionella pneumophila str. Paris

50.8

100

0.513
  comM Legionella pneumophila strain ERS1305867

50.8

100

0.513
  comM Glaesserella parasuis strain SC1401

50

100

0.507
  comM Haemophilus influenzae Rd KW20

50.2

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.346

100

0.43

Multiple sequence alignment