Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C4J99_RS27680 Genome accession   NZ_CP027758
Coordinates   6066262..6067758 (+) Length   498 a.a.
NCBI ID   WP_068965771.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain R2-54-08W     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6061262..6072758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J99_RS27650 (C4J99_5529) - 6061733..6062428 (+) 696 WP_124402308.1 HAD family hydrolase -
  C4J99_RS27655 (C4J99_5530) sutA 6062622..6062954 (-) 333 WP_124402309.1 transcriptional regulator SutA -
  C4J99_RS27660 (C4J99_5531) - 6063057..6063482 (-) 426 WP_124402310.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C4J99_RS27665 (C4J99_5532) - 6063692..6065029 (-) 1338 WP_043046900.1 ammonium transporter -
  C4J99_RS27670 (C4J99_5533) glnK 6065064..6065402 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  C4J99_RS27675 (C4J99_5534) - 6065826..6066089 (+) 264 WP_043046899.1 accessory factor UbiK family protein -
  C4J99_RS27680 (C4J99_5535) comM 6066262..6067758 (+) 1497 WP_068965771.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C4J99_RS27685 (C4J99_5536) - 6067765..6068340 (-) 576 WP_124402311.1 TetR/AcrR family transcriptional regulator -
  C4J99_RS27690 (C4J99_5537) - 6068455..6069369 (+) 915 WP_124402312.1 ABC transporter six-transmembrane domain-containing protein -
  C4J99_RS27695 (C4J99_5538) - 6069373..6071349 (-) 1977 WP_124402313.1 methyl-accepting chemotaxis protein -
  C4J99_RS27700 (C4J99_5539) - 6071527..6072447 (-) 921 WP_046070071.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53438.65 Da        Isoelectric Point: 7.9135

>NTDB_id=280233 C4J99_RS27680 WP_068965771.1 6066262..6067758(+) (comM) [Pseudomonas synxantha strain R2-54-08W]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDEVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYTSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLQPLSHWPNRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPSQQI
GETTAQASAQVAQARERQQQRQGCANAFLDLPRLREHCQLAKADETWLEAACERLTLSLRAAHRLLKVARTLADLEQVDG
IARHHLAEALQYRPAAIG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=280233 C4J99_RS27680 WP_068965771.1 6066262..6067758(+) (comM) [Pseudomonas synxantha strain R2-54-08W]
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGGTCGGCGTCGAAGCCCCTGCCGTCACCGTCGAAGTGCATATGGCCAA
TGGTCTGCCATCACTGACACTGGTGGGTTTGCCGGAGACGGCGGTGAAAGAGAGCAAAGACCGCGTGCGCAGTGCCATTT
TGAATTCGGCGCTGCAATACCCAGCACGTCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCGATTGCGCTGGGGATCCTCGCGGCCAGCGTGCAGGTGCCGGCGTTGATGCTCGATGAGGTGGAGTGCCT
GGGGGAGCTGGCGCTATCCGGCGAGGTGCGGGCGGTGAAAGGCGTGCTGCCGGCAGCACTGGCAGCGCGCAAGGCTGGGC
GCACCGTGATAGTGCCCCGAGCCAATGCCGAGGAAGCGTGCCTGGCGTCTGGATTGAAAGTGATTGCCGTGGATCATTTG
CTGCAGGTGGTGGCGCACCTGAATGGACACGTGCCGATTGAACCCTACACATCCGACGGCCTGCTGTATTTGAACAAACC
CTACCCGGACCTGAGTGAGGTACAGGGCCAATTGGCGGCCAAGCGTGCGCTGCTGATCGCCGCGGCCGGTGCGCATAACC
TGTTGTTCAGTGGCCCCCCGGGCACCGGTAAGACCCTGCTCGCCAGCCGGCTGCCGGGCTTGCTGCCACCGTTGAGCGAG
CAGGAAGCCCTGGAAGTGGCAGCGATCCAATCCGTGGTCAGCCTCCAGCCCCTTAGTCATTGGCCTAACCGCCCGTTCCG
GCAACCGCACCATTCGGCATCCGGGCCGGCGCTGGTGGGTGGCGGCTCGAAGCCGCAACCGGGGGAAATCACCCTGGCCC
ACCACGGGGTGCTGTTCCTGGATGAACTGCCGGAGTTTGATCGTAAGGTGCTGGAAGTGCTGCGCGAGCCATTGGAGTCT
GGGCATATCGTGATCTCTCGAGCCCGTGACCGGGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCGGCGATGAACCCCTG
CCCTTGTGGCTACATGGGTGAGCCCAGTGGGCGTTGCCGGTGCACGCCGGAGCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGGCCGTTGCTGGACCGCATTGATTTGCACCTGACGGTGGCCCGGGAGACCACTGCGCTGAATCCCTCCCAACAGATC
GGCGAAACCACCGCTCAGGCATCCGCCCAGGTAGCGCAAGCCCGCGAGCGTCAGCAACAACGCCAGGGCTGTGCCAATGC
GTTTCTCGACCTGCCGCGGCTGCGCGAACACTGCCAGCTGGCAAAAGCCGATGAAACCTGGCTGGAGGCCGCGTGTGAAC
GCCTGACGCTATCCCTGCGCGCCGCACACCGGCTGCTCAAGGTAGCGCGCACGCTAGCGGATCTTGAGCAAGTAGACGGC
ATCGCTCGCCATCATTTGGCGGAGGCATTGCAGTACCGGCCGGCCGCGATTGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.768

99.398

0.564
  comM Glaesserella parasuis strain SC1401

55.888

100

0.562
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

55.4

100

0.556
  comM Legionella pneumophila str. Paris

50.605

99.598

0.504
  comM Legionella pneumophila strain ERS1305867

50.605

99.598

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.466

Multiple sequence alignment