Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C4K03_RS30625 Genome accession   NZ_CP027754
Coordinates   6561703..6563199 (+) Length   498 a.a.
NCBI ID   WP_124379925.1    Uniprot ID   A0A3G7UGD4
Organism   Pseudomonas synxantha strain 30B     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6556703..6568199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K03_RS30595 (C4K03_6099) - 6557138..6557833 (+) 696 WP_124379920.1 HAD family hydrolase -
  C4K03_RS30600 (C4K03_6101) sutA 6558021..6558353 (-) 333 WP_124379921.1 transcriptional regulator SutA -
  C4K03_RS30605 (C4K03_6102) - 6558456..6558881 (-) 426 WP_124379922.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C4K03_RS30610 (C4K03_6103) - 6559091..6560428 (-) 1338 WP_124379923.1 ammonium transporter -
  C4K03_RS30615 (C4K03_6104) glnK 6560463..6560801 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  C4K03_RS30620 (C4K03_6105) - 6561224..6561487 (+) 264 WP_124379924.1 accessory factor UbiK family protein -
  C4K03_RS30625 (C4K03_6106) comM 6561703..6563199 (+) 1497 WP_124379925.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C4K03_RS30630 (C4K03_6107) - 6563206..6563781 (-) 576 WP_124379926.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  C4K03_RS30635 (C4K03_6108) - 6563896..6564810 (+) 915 WP_124379927.1 ABC transporter six-transmembrane domain-containing protein -
  C4K03_RS30640 (C4K03_6109) - 6564814..6566790 (-) 1977 WP_124379928.1 methyl-accepting chemotaxis protein -
  C4K03_RS30645 (C4K03_6110) - 6566968..6567888 (-) 921 WP_124379929.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53426.60 Da        Isoelectric Point: 7.9135

>NTDB_id=280135 C4K03_RS30625 WP_124379925.1 6561703..6563199(+) (comM) [Pseudomonas synxantha strain 30B]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDEVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYTSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLQPLSHWPNRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPSQQV
GETTAQASAQVAQARERQQQRQGCANAFLDLPRLREHCQLAKADESWLESACERLTLSLRAAHRLLKVARTLADLEQVDG
IARHHLAEALQYRPAAIG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=280135 C4K03_RS30625 WP_124379925.1 6561703..6563199(+) (comM) [Pseudomonas synxantha strain 30B]
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGGTCGGCGTCGAAGCTCCTGCCGTCACCGTCGAAGTGCATATGGCCAA
TGGCCTGCCGTCATTGACACTGGTGGGTTTGCCGGAGACGGCGGTGAAAGAGAGCAAAGACCGCGTGCGCAGTGCCATCC
TGAATTCGGCGCTGCAATACCCAGCACGTCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCGATTGCCCTGGGGATCCTCGCGGCCAGCGTGCAGGTGCCGGCGTTGATGCTCGATGAAGTGGAGTGCCT
GGGAGAGCTGGCGCTATCCGGCGAGGTGCGGGCGGTGAAAGGCGTGCTGCCGGCAGCACTGGCAGCGCGCAAGGCTGGGC
GCACCGTGATAGTGCCGCGGGCCAATGCCGAGGAAGCGTGCCTGGCGTCTGGGTTGAAAGTGATTGCCGTGGATCATTTG
CTGCAGGTAGTGGCGCACCTGAATGGACACGTGCCGATTGAACCGTACACCTCCGACGGCCTGCTGTATTTGAACAAACC
CTACCCGGACCTGAGTGAGGTACAGGGCCAATTGGCGGCCAAGCGTGCGCTGCTGATCGCGGCGGCCGGCGCGCATAACC
TGTTGTTCAGTGGCCCCCCGGGCACCGGTAAGACCCTGCTCGCCAGCCGGCTTCCGGGTTTGCTGCCGCCGCTGAGCGAG
CAGGAAGCCCTGGAAGTGGCAGCGATCCAATCCGTGGTCAGCCTCCAGCCCCTGAGCCATTGGCCTAACCGCCCGTTCCG
GCAACCGCACCATTCGGCATCCGGGCCGGCGCTGGTGGGTGGCGGCTCGAAGCCGCAACCGGGGGAAATCACCCTGGCCC
ACCACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTTGATCGCAAGGTGCTGGAAGTGCTGCGCGAGCCATTGGAGTCG
GGGCATATCGTGATCTCCCGGGCCCGTGACCGGGTGAGTTTCCCGGCGCGTTTTCAACTGGTCGCGGCGATGAACCCTTG
CCCTTGCGGCTACATGGGCGAGCCCAGTGGGCGTTGCCGGTGCACGCCGGAGCAGATACAGCGCTATCGCAACAAGCTCT
CCGGGCCGTTGCTGGACCGCATTGACTTGCACCTGACGGTGGCCCGGGAGACCACTGCGCTGAACCCCTCCCAACAGGTC
GGCGAAACCACTGCTCAGGCATCCGCCCAGGTAGCACAAGCCCGCGAGCGTCAGCAACAGCGCCAGGGCTGTGCGAATGC
GTTCCTCGATCTGCCGCGGCTGCGCGAACACTGCCAGCTGGCGAAAGCCGATGAAAGTTGGCTGGAGAGCGCCTGTGAAC
GGCTGACTTTATCCCTGCGCGCCGCACACCGGCTGCTCAAGGTAGCGCGCACGCTAGCGGACCTTGAGCAAGTAGACGGC
ATCGCTCGCCATCATTTGGCGGAAGCACTGCAATACCGACCGGCCGCGATTGGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G7UGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.768

99.398

0.564
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.888

100

0.562
  comM Haemophilus influenzae Rd KW20

55.4

100

0.556
  comM Legionella pneumophila str. Paris

50.605

99.598

0.504
  comM Legionella pneumophila strain ERS1305867

50.605

99.598

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.466

Multiple sequence alignment