Detailed information NTG0279779

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K30_RS08990
• Genome accession: NZ_CP027739
• Coordinates: 1956688..1958919 (+)
• Length: 743 a.a.
• NCBI ID: WP_106696835.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain ToZa7
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1951688..1963919

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K30_RS08965 (C4K30_1809)	-	1952810..1953469 (+)	660	WP_124302553.1	transglutaminase family protein	-
C4K30_RS08970 (C4K30_1810)	-	1953512..1954135 (+)	624	WP_124302554.1	glutathione S-transferase	-
C4K30_RS08975 (C4K30_1811)	-	1954268..1955200 (+)	933	WP_025804356.1	ABC transporter ATP-binding protein	-
C4K30_RS08980 (C4K30_1812)	-	1955197..1955976 (+)	780	WP_124302555.1	ABC transporter permease	-
C4K30_RS08985 (C4K30_1813)	-	1956025..1956540 (-)	516	WP_124302556.1	DUF2062 domain-containing protein	-
C4K30_RS08990 (C4K30_1814)	comA	1956688..1958919 (+)	2232	WP_106696835.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K30_RS08995 (C4K30_1815)	exbB	1959022..1959657 (+)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K30_RS09000 (C4K30_1816)	-	1959654..1960082 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K30_RS09005 (C4K30_1817)	lpxK	1960082..1961092 (+)	1011	WP_025804352.1	tetraacyldisaccharide 4'-kinase	-
C4K30_RS09010 (C4K30_1818)	-	1961116..1961301 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K30_RS09015 (C4K30_1819)	kdsB	1961298..1962062 (+)	765	WP_124302557.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K30_RS09020 (C4K30_1820)	-	1962062..1962526 (+)	465	WP_124302558.1	low molecular weight protein-tyrosine-phosphatase	-
C4K30_RS09025 (C4K30_1821)	murB	1962523..1963542 (+)	1020	WP_025804350.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81421.57 Da
• Isoelectric Point: 10.0461

>NTDB_id=279779 C4K30_RS08990 WP_106696835.1 1956688..1958919(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain ToZa7]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWVLDDRLAEPLDGQTRWLEG
RVVGLPQQAEGVVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAAMQESWRARIRQRLLQVDSHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGDRVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSLALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYAEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279779 C4K30_RS08990 WP_106696835.1 1956688..1958919(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain ToZa7]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGTGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCCGAGGGCGTGGTGCGTTTCGAGCTGGAAGGCGGACGGGCGCGGCGCGGACGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCACCGGTGCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGG
ACGGTCAAGGATGGGCAGCTTCTGGCCGCCATGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TTCCCATGGGCGCGCTGGTGGCCTGGCGGCCCTGGTACTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGTCTGTGGCCCGGACGTTGGCCCTGGCTACCCTGGGCCTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTAGTGCTGATCT
GGCGTCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGTTGGCGGAACCCTGGATCAGCCTGCTGGTGTTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTACTGTT
CCGCGGTCTGGCGCTGCTGGCTGCCCAATGGCCGGCGTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGTTGTTGCTGCCCGCCGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGTTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGTTGCCGTATGGCGAGGCGGAGGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGACTCCGACCTGGGCGACCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCATTGCCCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCACGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGATTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGAGTACGTTTTTCCCTGTGGCAATGGGCAGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCAGGCGGAA
CGCGCGCTGTTGAATACTCCGCTGGCCGTCGAAACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCTGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGGGGACACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGCACATACGCCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624