Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C4J87_RS25125 Genome accession   NZ_CP027734
Coordinates   5437598..5439094 (+) Length   498 a.a.
NCBI ID   WP_124368802.1    Uniprot ID   -
Organism   Pseudomonas sp. R1-43-08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5432598..5444094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J87_RS25095 (C4J87_4979) - 5432843..5433538 (+) 696 WP_124368799.1 HAD family hydrolase -
  C4J87_RS25100 (C4J87_4980) sutA 5433811..5434143 (-) 333 WP_124364948.1 transcriptional regulator SutA -
  C4J87_RS25105 (C4J87_4981) - 5434246..5434671 (-) 426 WP_124368800.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C4J87_RS25110 (C4J87_4982) - 5434882..5436222 (-) 1341 WP_124364950.1 ammonium transporter -
  C4J87_RS25115 (C4J87_4983) glnK 5436257..5436595 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  C4J87_RS25120 (C4J87_4984) - 5437018..5437281 (+) 264 WP_124368801.1 accessory factor UbiK family protein -
  C4J87_RS25125 (C4J87_4985) comM 5437598..5439094 (+) 1497 WP_124368802.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C4J87_RS25130 (C4J87_4986) - 5439128..5441104 (-) 1977 WP_124368803.1 methyl-accepting chemotaxis protein -
  C4J87_RS25135 (C4J87_4987) - 5441283..5442203 (-) 921 WP_124368804.1 LysR substrate-binding domain-containing protein -
  C4J87_RS25140 (C4J87_4989) - 5442355..5443758 (+) 1404 WP_124368805.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53443.76 Da        Isoelectric Point: 8.4179

>NTDB_id=279662 C4J87_RS25125 WP_124368802.1 5437598..5439094(+) (comM) [Pseudomonas sp. R1-43-08]
MSLAIVHSRAQIGVEAPVVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPPRRITLNLAPADLPKDGGR
FDLAIALGILAASMQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTLIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYQADGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
HEALEVAAIQSVVSLAPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALSPAQQT
GDNTAKASAAVADARERQQRRQGCANAFLDLPGLRKYCKLAKVDEGWLESACERLTLSLRAAHRLLKVARTLADLEQTEN
IARHHLQEALQYRPAAST

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=279662 C4J87_RS25125 WP_124368802.1 5437598..5439094(+) (comM) [Pseudomonas sp. R1-43-08]
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGATCGGCGTTGAAGCCCCCGTCGTCACGGTTGAAGTGCATATGGCGAA
TGGCTTGCCATCACTGACGCTGGTGGGCTTGCCTGAGACGGCGGTAAAGGAAAGCAAGGACCGTGTACGCAGCGCCATTC
TCAATTCGGCCCTGCAATATCCGCCGCGTCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCAATTGCCCTGGGGATCCTGGCGGCCAGTATGCAGGTGCCGGCGTTGATGCTCGATGATGTTGAGTGCCT
GGGCGAGTTGGCGCTGTCCGGCGAGGTACGCGCGGTGAAAGGCGTGTTGCCTGCCGCATTGGCGGCGCGCAAGGCCGGGC
GCACCTTGATAGTGCCCAGGGCGAACGCTGAGGAAGCGTGCCTGGCATCGGGATTGAAGGTGATTGCGGTGGACCACTTG
CTGCAAGTGGTGGCGCACCTGAACGGGCATGTACCGATCGAGCCCTACCAGGCGGACGGCTTGCTGTATTTGAACAAACC
TTACCCGGACCTCAGTGAAGTACAGGGCCAGTTGGCCGCCAAGCGTGCCTTGCTGATCGCGGCTGCGGGGGCGCACAACC
TGTTATTCAGCGGGCCGCCCGGCACTGGCAAGACCTTGCTCGCCAGCCGCCTGCCGGGGTTGCTGCCACCACTGAGTGAG
CACGAAGCGCTGGAAGTCGCGGCGATTCAATCGGTGGTCAGCCTGGCGCCGTTGAGCCATTGGCCGCAACGGCCGTTTCG
CCAGCCGCACCACTCGGCGTCTGGCCCCGCGCTGGTCGGCGGCGGATCGAAACCACAACCGGGGGAAATCACCCTGGCCC
ACCACGGCGTATTGTTCCTCGACGAATTGCCGGAGTTCGATCGCAAAGTCCTGGAGGTGCTGCGTGAGCCACTTGAGTCG
GGGCATATCGTGATTTCCCGCGCCCGCGACCGGGTAAGCTTCCCGGCACGCTTCCAATTGGTCGCGGCGATGAACCCCTG
CCCTTGCGGCTATCTGGGCGAACCCAGCGGCCGTTGTCGATGCACACCGGAGCAGATCCAACGCTATCGCAACAAGCTGT
CCGGGCCGTTGCTGGATCGAATCGATCTGCACCTGACCGTGGCGCGGGAGGCCACGGCACTGAGCCCGGCACAACAGACC
GGTGACAACACTGCGAAAGCTTCCGCAGCAGTGGCCGATGCACGGGAACGCCAGCAACGCCGCCAAGGATGCGCCAACGC
CTTCCTCGACCTGCCGGGGTTGCGCAAGTACTGCAAGCTGGCAAAGGTCGATGAAGGCTGGTTGGAAAGCGCATGCGAAC
GACTGACGCTGTCGCTGCGGGCGGCCCATCGGTTGCTCAAGGTAGCGCGTACCCTGGCGGACCTGGAACAAACAGAGAAC
ATCGCCCGCCACCATCTGCAAGAGGCCTTGCAGTACCGTCCGGCGGCGAGCACTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.364

99.398

0.56
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Glaesserella parasuis strain SC1401

55.09

100

0.554
  comM Haemophilus influenzae Rd KW20

54.8

100

0.55
  comM Legionella pneumophila str. Paris

52.2

100

0.524
  comM Legionella pneumophila strain ERS1305867

52.2

100

0.524
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.322

100

0.468

Multiple sequence alignment