Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C4J95_RS26335 Genome accession   NZ_CP027726
Coordinates   5695184..5696680 (+) Length   498 a.a.
NCBI ID   WP_124360313.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain R4-35-08     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5690184..5701680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J95_RS26305 (C4J95_5201) - 5690609..5691304 (+) 696 WP_124360312.1 HAD family hydrolase -
  C4J95_RS26310 (C4J95_5202) sutA 5691499..5691831 (-) 333 WP_057723338.1 transcriptional regulator SutA -
  C4J95_RS26315 (C4J95_5203) - 5691934..5692359 (-) 426 WP_065886967.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C4J95_RS26320 (C4J95_5204) - 5692570..5693910 (-) 1341 WP_104505111.1 ammonium transporter -
  C4J95_RS26325 (C4J95_5205) glnK 5693946..5694284 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  C4J95_RS26330 (C4J95_5206) - 5694706..5694969 (+) 264 WP_003195432.1 accessory factor UbiK family protein -
  C4J95_RS26335 (C4J95_5207) comM 5695184..5696680 (+) 1497 WP_124360313.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C4J95_RS26340 (C4J95_5208) - 5696707..5698683 (-) 1977 WP_124360314.1 methyl-accepting chemotaxis protein -
  C4J95_RS26345 (C4J95_5209) - 5698861..5699781 (-) 921 WP_124360315.1 LysR substrate-binding domain-containing protein -
  C4J95_RS26350 (C4J95_5210) - 5699933..5701336 (+) 1404 WP_124360316.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53559.94 Da        Isoelectric Point: 8.4179

>NTDB_id=279468 C4J95_RS26335 WP_124360313.1 5695184..5696680(+) (comM) [Pseudomonas orientalis strain R4-35-08]
MSLAIVHSRAQVGVEAPVVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTLMVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYRSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREATALSPAQQT
EDTTAKTAVLVADARERQQRRQGCANAFLDLPGLRKYCTLAKVDESWLENACERLTLSLRAAHRLLKVARTLADLEQKDA
IARHHLQEALQYRPAANS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=279468 C4J95_RS26335 WP_124360313.1 5695184..5696680(+) (comM) [Pseudomonas orientalis strain R4-35-08]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCCGTCGTCACTGTCGAAGTGCATATGGCCAA
TGGGTTGCCGTCACTGACGCTGGTGGGCTTGCCGGAAACGGCGGTAAAGGAAAGCAAGGACCGCGTACGCAGCGCCATTC
TCAATTCGGCCCTGCAATACCCGGCGCGGCGCATCACGCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATCTGGCGATTGCCCTGGGAATCCTGGCGGCCAGCGTGCAAGTGCCGGCGTTGATGCTCGATGATGTCGAGTGCCT
CGGCGAGTTGGCGCTGTCCGGCGAAGTCCGCGCGGTCAAAGGCGTGTTGCCCGCCGCTTTGGCGGCGCGCAAGGCCGGGC
GCACCTTGATGGTGCCCAGGGCAAACGCCGAGGAGGCGTGCCTGGCGTCAGGGTTGAAGGTGATTGCGGTGGACCACCTG
CTGCAGGTGGTGGCGCACTTGAATGGGCATGTGCCAATCGAGCCCTACCGGTCGGACGGCTTGCTGTACCTGAACAAACC
TTACCCCGACCTCAGTGAAGTCCAGGGCCAGTTGGCTGCCAAGCGCGCCTTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGCTGAGCGGGCCGCCCGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGGTTGCTGCCACCGCTCAGTGAG
CAGGAAGCGCTGGAGGTTGCGGCGATTCAATCCGTGGTCAGCCTGGCACCGTTGAGCCATTGGCCGCACCGGCCGTTTCG
CCAGCCGCACCATTCGGCATCCGGCCCTGCGCTGGTCGGCGGCGGGTCAAAGCCGCAACCAGGGGAGATTACGCTGGCCC
ATCACGGCGTACTGTTCCTGGATGAGTTGCCGGAATTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTCGAATCA
GGGCATATCGTGATTTCCCGCGCCCGTGACCGAGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCAGCGATGAACCCCTG
CCCTTGCGGTTATATGGGCGAACCCAGCGGCCGTTGCCGGTGTACACCGGAACAGGTCCAGCGCTATCGCAACAAGCTTT
CGGGGCCGTTGCTGGACCGGATCGATCTGCACCTGACGGTGGCGCGGGAAGCCACGGCGCTGAGCCCGGCGCAACAGACC
GAGGACACCACCGCGAAAACGGCCGTCTTGGTGGCCGACGCACGGGAACGCCAGCAACGACGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGCCGGGGCTGCGCAAATACTGCACGCTGGCGAAGGTCGATGAAAGTTGGCTGGAAAACGCCTGCGAGC
GGCTGACGCTTTCGTTGCGGGCGGCCCATCGCTTGCTCAAGGTGGCGCGTACGCTGGCCGACCTGGAGCAAAAAGACGCC
ATCGCTCGCCACCACCTGCAAGAGGCGTTGCAATACCGCCCGGCGGCGAACTCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.162

99.398

0.558
  comM Vibrio cholerae strain A1552

55.556

99.398

0.552
  comM Glaesserella parasuis strain SC1401

54.491

100

0.548
  comM Haemophilus influenzae Rd KW20

54

100

0.542
  comM Legionella pneumophila str. Paris

51.008

99.598

0.508
  comM Legionella pneumophila strain ERS1305867

51.008

99.598

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.825

100

0.474

Multiple sequence alignment