Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C4J96_RS26285 Genome accession   NZ_CP027725
Coordinates   5720687..5722183 (+) Length   498 a.a.
NCBI ID   WP_124427843.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain R2-66-08W     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5715687..5727183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J96_RS26255 (C4J96_5247) - 5716112..5716807 (+) 696 WP_124427841.1 HAD family hydrolase -
  C4J96_RS26260 (C4J96_5248) sutA 5717002..5717334 (-) 333 WP_057723338.1 transcriptional regulator SutA -
  C4J96_RS26265 (C4J96_5249) - 5717437..5717862 (-) 426 WP_124427842.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C4J96_RS26270 (C4J96_5250) - 5718073..5719413 (-) 1341 WP_104505111.1 ammonium transporter -
  C4J96_RS26275 (C4J96_5251) glnK 5719449..5719787 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  C4J96_RS26280 (C4J96_5252) - 5720209..5720472 (+) 264 WP_003195432.1 accessory factor UbiK family protein -
  C4J96_RS26285 (C4J96_5253) comM 5720687..5722183 (+) 1497 WP_124427843.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C4J96_RS26290 (C4J96_5254) - 5722210..5724186 (-) 1977 WP_124360314.1 methyl-accepting chemotaxis protein -
  C4J96_RS26295 (C4J96_5255) - 5724364..5725284 (-) 921 WP_124360315.1 LysR substrate-binding domain-containing protein -
  C4J96_RS26300 (C4J96_5256) - 5725436..5726839 (+) 1404 WP_124427844.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53514.88 Da        Isoelectric Point: 8.4179

>NTDB_id=279444 C4J96_RS26285 WP_124427843.1 5720687..5722183(+) (comM) [Pseudomonas orientalis strain R2-66-08W]
MSLAIVHSRAQVGVEAPVVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTLIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYRSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREATALSPAQQT
EDTTAKTAVLVADARERQQRRQGCANAFLDLPGLRKYCTLAKVDESWLENACERLTLSLRAAHRLLKVARTLADLEQKDA
IARHHLQEALQYRPAASS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=279444 C4J96_RS26285 WP_124427843.1 5720687..5722183(+) (comM) [Pseudomonas orientalis strain R2-66-08W]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCCGTCGTCACTGTCGAAGTGCATATGGCCAA
TGGGTTGCCGTCACTGACGCTGGTGGGCTTGCCGGAAACGGCGGTAAAGGAAAGCAAGGACCGCGTACGCAGCGCCATTC
TCAATTCGGCCCTGCAATACCCGGCGCGGCGCATCACGCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATCTGGCGATTGCCCTGGGAATCCTGGCGGCCAGCGTGCAAGTGCCGGCGTTGATGCTCGATGATGTCGAGTGCCT
CGGCGAGTTGGCGCTGTCCGGCGAAGTCCGCGCGGTCAAAGGCGTGTTGCCCGCCGCTTTGGCGGCGCGCAAGGCCGGGC
GCACCTTGATAGTGCCCAGGGCAAACGCCGAGGAGGCGTGCCTGGCGTCAGGGTTGAAGGTGATTGCGGTGGACCACCTG
CTGCAGGTGGTGGCGCACTTGAATGGGCATGTGCCAATCGAGCCCTACCGGTCGGACGGCTTGCTGTACCTGAACAAACC
TTACCCCGACCTCAGTGAAGTCCAGGGCCAGTTGGCTGCCAAGCGCGCCTTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGCTGAGCGGGCCGCCCGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGGTTGCTGCCACCGCTCAGTGAG
CAGGAAGCGCTGGAGGTTGCGGCGATTCAATCCGTGGTCAGCCTGGCACCGTTGAGCCATTGGCCGCACCGGCCGTTTCG
CCAGCCGCACCATTCGGCATCCGGCCCTGCGCTGGTCGGCGGCGGGTCAAAGCCGCAACCAGGGGAGATTACGCTGGCCC
ATCACGGCGTACTGTTCCTGGATGAGTTGCCGGAATTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTCGAATCA
GGGCATATCGTAATTTCCCGCGCCCGTGACCGAGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCAGCGATGAACCCCTG
CCCTTGCGGTTATATGGGCGAACCCAGCGGCCGTTGCCGGTGTACACCGGAACAGGTCCAGCGCTATCGCAACAAGCTTT
CGGGGCCGTTGCTCGACCGGATCGACCTGCACCTGACGGTGGCGCGGGAAGCCACGGCGCTGAGCCCGGCGCAACAGACC
GAGGACACCACCGCGAAAACGGCCGTCTTGGTGGCCGACGCACGGGAACGCCAGCAACGACGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGCCGGGGCTGCGCAAATACTGCACGCTGGCGAAGGTCGATGAAAGTTGGCTGGAAAACGCCTGCGAGC
GGCTGACGCTTTCGTTGCGGGCGGCCCATCGCTTGCTCAAGGTGGCGCGTACGCTGGCCGACCTGGAGCAAAAAGACGCC
ATCGCTCGCCACCACCTGCAAGAGGCGTTGCAATACCGCCCGGCGGCGAGCTCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.162

99.398

0.558
  comM Vibrio cholerae strain A1552

55.556

99.398

0.552
  comM Glaesserella parasuis strain SC1401

54.691

100

0.55
  comM Haemophilus influenzae Rd KW20

54.2

100

0.544
  comM Legionella pneumophila str. Paris

51.21

99.598

0.51
  comM Legionella pneumophila strain ERS1305867

51.21

99.598

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.024

100

0.476

Multiple sequence alignment