Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C4J97_RS26375 Genome accession   NZ_CP027724
Coordinates   5752825..5754321 (+) Length   498 a.a.
NCBI ID   WP_124425440.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain L1-3-08     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5747825..5759321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J97_RS26340 (C4J97_5311) - 5748187..5748882 (+) 696 WP_124425437.1 HAD family hydrolase -
  C4J97_RS26350 (C4J97_5312) sutA 5749073..5749405 (-) 333 WP_057723338.1 transcriptional regulator SutA -
  C4J97_RS26355 (C4J97_5313) - 5749508..5749933 (-) 426 WP_057723337.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C4J97_RS26360 (C4J97_5314) - 5750144..5751484 (-) 1341 WP_104505111.1 ammonium transporter -
  C4J97_RS26365 (C4J97_5315) glnK 5751520..5751858 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  C4J97_RS26370 (C4J97_5316) - 5752280..5752543 (+) 264 WP_124425439.1 accessory factor UbiK family protein -
  C4J97_RS26375 (C4J97_5317) comM 5752825..5754321 (+) 1497 WP_124425440.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C4J97_RS26380 (C4J97_5318) - 5754348..5756324 (-) 1977 WP_124425441.1 methyl-accepting chemotaxis protein -
  C4J97_RS26385 (C4J97_5319) - 5756503..5757423 (-) 921 WP_124425442.1 LysR substrate-binding domain-containing protein -
  C4J97_RS26390 (C4J97_5320) - 5757575..5758978 (+) 1404 WP_124425443.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53498.84 Da        Isoelectric Point: 8.2586

>NTDB_id=279420 C4J97_RS26375 WP_124425440.1 5752825..5754321(+) (comM) [Pseudomonas orientalis strain L1-3-08]
MSLAIVHSRAQVGVEAPVVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTLIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYRSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREATALSPAQQT
EDTTAKTAVLVAHARERQQRRQGCANAFLDLPGLREYCTLAKVDEGWLENACERLTLSLRAAHRLLKVARTLADLEQKDA
IARHHLQEALQYRPAASS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=279420 C4J97_RS26375 WP_124425440.1 5752825..5754321(+) (comM) [Pseudomonas orientalis strain L1-3-08]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCCGTCGTCACTGTCGAAGTGCATATGGCCAA
TGGGTTGCCGTCACTGACGCTGGTGGGCTTGCCGGAAACGGCGGTAAAGGAAAGCAAGGACCGCGTACGCAGCGCCATTC
TCAATTCGGCCCTGCAATACCCGGCGCGGCGCATCACGCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATTGCCCTGGGGATACTGGCGGCCAGCGTGCAAGTGCCGGCGCTGATGCTCGATGATGTCGAGTGCCT
GGGGGAGTTGGCGCTGTCCGGCGAAGTCCGCGCGGTGAAGGGCGTGTTGCCGGCCGCTTTGGCGGCGCGCAAGGCCGGGC
GCACCTTGATAGTGCCCAGGGCAAACGCCGAGGAGGCGTGCCTGGCATCAGGGTTGAAGGTGATTGCGGTGGACCACCTG
CTGCAGGTGGTGGCGCACTTGAATGGGCATGTGCCGATCGAGCCCTACCGGTCGGACGGTTTGCTGTACCTGAACAAACC
TTACCCCGACCTCAGTGAAGTCCAGGGCCAGTTGGCTGCCAAGCGTGCCTTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGCTGAGCGGGCCGCCCGGCACCGGCAAGACGCTGCTCGCCAGTCGCCTGCCGGGGTTGCTGCCACCGCTCAGTGAG
CAGGAAGCGCTGGAAGTTGCGGCGATTCAATCCGTGGTCAGCCTGGCACCGTTGAGCCATTGGCCGCAGCGGCCGTTTCG
CCAGCCGCACCATTCGGCATCCGGCCCTGCGCTGGTCGGCGGCGGGTCAAAGCCGCAACCAGGGGAGATTACGCTGGCCC
ATCACGGCGTACTGTTCCTGGATGAGTTGCCGGAATTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTCGAATCG
GGGCATATCGTGATTTCCCGCGCCCGTGACCGAGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCAGCGATGAACCCCTG
CCCTTGCGGTTATATGGGCGAACCCAGCGGCCGTTGCCGGTGTACACCGGAACAGGTCCAGCGCTATCGCAACAAGCTTT
CGGGGCCGTTGCTCGACCGGATCGATCTGCACCTGACGGTGGCGCGGGAAGCCACGGCGCTGAGCCCGGCACAACAGACC
GAGGACACCACCGCGAAAACGGCCGTCTTGGTGGCCCACGCACGGGAACGCCAGCAACGACGCCAGGGCTGTGCCAACGC
CTTCCTAGACCTGCCGGGGCTGCGCGAATACTGCACGCTGGCGAAGGTCGATGAAGGTTGGCTGGAAAACGCCTGCGAGC
GGCTGACGCTTTCGTTGCGGGCGGCCCATCGCTTGCTCAAGGTGGCGCGTACGCTGGCCGACCTGGAACAAAAAGACGCC
ATCGCTCGCCACCACCTGCAAGAGGCGTTGCAATACCGCCCGGCGGCGAGCTCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.162

99.398

0.558
  comM Vibrio cholerae strain A1552

55.556

99.398

0.552
  comM Glaesserella parasuis strain SC1401

54.691

100

0.55
  comM Haemophilus influenzae Rd KW20

54.4

100

0.546
  comM Legionella pneumophila str. Paris

51.21

99.598

0.51
  comM Legionella pneumophila strain ERS1305867

51.21

99.598

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.024

100

0.476

Multiple sequence alignment