Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C4J98_RS26065 Genome accession   NZ_CP027723
Coordinates   5696938..5698434 (+) Length   498 a.a.
NCBI ID   WP_124434467.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain 8B     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5691938..5703434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J98_RS26035 (C4J98_5175) - 5692363..5693058 (+) 696 WP_124434465.1 HAD family hydrolase -
  C4J98_RS26040 (C4J98_5176) sutA 5693253..5693585 (-) 333 WP_124434466.1 transcriptional regulator SutA -
  C4J98_RS26045 (C4J98_5177) - 5693688..5694113 (-) 426 WP_057723337.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C4J98_RS26050 (C4J98_5178) - 5694324..5695664 (-) 1341 WP_104505111.1 ammonium transporter -
  C4J98_RS26055 (C4J98_5179) glnK 5695700..5696038 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  C4J98_RS26060 (C4J98_5180) - 5696460..5696723 (+) 264 WP_003195432.1 accessory factor UbiK family protein -
  C4J98_RS26065 (C4J98_5181) comM 5696938..5698434 (+) 1497 WP_124434467.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C4J98_RS26070 (C4J98_5182) - 5698462..5700438 (-) 1977 WP_124434468.1 methyl-accepting chemotaxis protein -
  C4J98_RS26075 (C4J98_5183) - 5700617..5701537 (-) 921 WP_124434469.1 LysR substrate-binding domain-containing protein -
  C4J98_RS26080 (C4J98_5184) - 5701689..5703092 (+) 1404 WP_124434470.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53436.78 Da        Isoelectric Point: 8.2637

>NTDB_id=279396 C4J98_RS26065 WP_124434467.1 5696938..5698434(+) (comM) [Pseudomonas orientalis strain 8B]
MSLAIVHSRAQVGVEAPVVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASMQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTLIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYRSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREATALSPAQQT
EDTTAKTAALVAAARERQQRRQGCANAFLDLPGLREHCTLAKVDESWLESACERLTLSLRAAHRLLKVARTLADLEQKDA
IARHHLQEALQYRPAAST

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=279396 C4J98_RS26065 WP_124434467.1 5696938..5698434(+) (comM) [Pseudomonas orientalis strain 8B]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAAGTCGGCGTCGAAGCCCCCGTCGTCACTGTCGAAGTGCACATGGCCAA
TGGGTTGCCGTCACTGACGCTGGTGGGTTTGCCGGAAACCGCGGTAAAGGAAAGCAAGGATCGCGTACGCAGCGCCATTC
TCAACTCGGCCCTGCAATACCCGGCGCGGCGCATCACGCTCAACCTCGCACCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATCTGGCGATTGCCCTGGGGATACTGGCGGCCAGCATGCAAGTGCCGGCGTTGATGCTCGATGATGTCGAGTGCCT
GGGGGAGTTGGCGCTGTCCGGCGAAGTCCGCGCGGTGAAAGGCGTGTTGCCGGCCGCTTTGGCGGCGCGCAAGGCCGGGC
GCACCTTGATAGTGCCCAGGGCAAACGCTGAGGAAGCGTGCCTGGCATCAGGATTGAAGGTGATTGCGGTGGACCACCTG
CTGCAGGTGGTGGCGCACTTGAATGGGCATGTGCCGATCGAGCCCTACCGGTCGGACGGCTTGCTGTACCTGAACAAACC
TTACCCGGACCTCAGTGAAGTCCAGGGCCAATTGGCTGCCAAGCGTGCCTTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGCTGAGCGGGCCGCCCGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGGTTGCTGCCACCGCTCAGTGAG
CAGGAAGCGCTGGAGGTTGCCGCGATTCAATCCGTGGTCAGCCTGGCACCGTTGAGCCATTGGCCGCACCGGCCGTTTCG
CCAGCCGCACCATTCGGCATCCGGCCCTGCGCTGGTGGGTGGCGGGTCAAAGCCGCAACCAGGGGAAATTACGCTGGCCC
ATCACGGCGTGCTGTTCCTGGATGAGTTGCCGGAATTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTCGAATCA
GGGCATATCGTGATTTCCCGCGCCCGTGACCGAGTGAGTTTCCCGGCGCGCTTTCAATTGGTCGCAGCGATGAACCCCTG
CCCTTGCGGCTATATGGGCGAACCCAGCGGCCGTTGCCGGTGTACACCGGAACAGGTCCAACGCTATCGCAACAAGCTTT
CGGGGCCGTTGCTCGACCGGATCGATCTGCACCTGACGGTGGCACGGGAAGCCACGGCGCTGAGCCCGGCACAACAGACC
GAGGACACCACCGCGAAAACGGCGGCGTTGGTGGCCGCCGCACGGGAACGCCAGCAACGACGCCAGGGCTGCGCCAACGC
CTTTCTCGACCTGCCGGGGCTGCGCGAACACTGCACGCTGGCGAAGGTCGATGAAAGTTGGCTGGAAAGCGCCTGCGAGC
GGCTGACGCTTTCGTTGCGGGCGGCCCATCGTTTGCTCAAGGTGGCGCGTACATTGGCGGACCTTGAACAAAAAGACGCC
ATCGCTCGCCACCATCTGCAGGAGGCGTTGCAATACCGCCCGGCAGCGAGCACTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.398

0.556
  comM Vibrio cholerae strain A1552

55.556

99.398

0.552
  comM Glaesserella parasuis strain SC1401

54.491

100

0.548
  comM Haemophilus influenzae Rd KW20

54.2

100

0.544
  comM Legionella pneumophila str. Paris

51.21

99.598

0.51
  comM Legionella pneumophila strain ERS1305867

51.21

99.598

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.466

Multiple sequence alignment