Detailed information NTG0279377

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J98_RS03875
• Genome accession: NZ_CP027723
• Coordinates: 872189..873055 (-)
• Length: 288 a.a.
• NCBI ID: WP_124431457.1
• Uniprot ID: -
• Organism: Pseudomonas orientalis strain 8B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 867189..878055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J98_RS03840 (C4J98_0768)	-	868062..869360 (-)	1299	WP_124431453.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J98_RS03845 (C4J98_0769)	-	869421..869594 (-)	174	WP_065887994.1	DUF3094 family protein	-
C4J98_RS03850 (C4J98_0770)	-	869648..870277 (-)	630	WP_124431454.1	DUF1780 domain-containing protein	-
C4J98_RS03855 (C4J98_0771)	-	870407..871096 (+)	690	WP_124431455.1	energy-coupling factor ABC transporter permease	-
C4J98_RS03860 (C4J98_0772)	-	871160..871375 (+)	216	WP_003171680.1	hypothetical protein	-
C4J98_RS03865 (C4J98_0773)	yacG	871372..871572 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
C4J98_RS03870 (C4J98_0774)	coaE	871569..872192 (-)	624	WP_124431456.1	dephospho-CoA kinase	-
C4J98_RS03875 (C4J98_0775)	pilD	872189..873055 (-)	867	WP_124431457.1	prepilin peptidase	Machinery gene
C4J98_RS03880 (C4J98_0776)	pilC	873052..874260 (-)	1209	WP_124431458.1	type II secretion system F family protein	Machinery gene
C4J98_RS03885 (C4J98_0777)	-	874459..874872 (+)	414	WP_124425575.1	pilin	-
C4J98_RS03895 (C4J98_0779)	-	875174..875479 (+)	306	WP_124431459.1	DUF6388 family protein	-
C4J98_RS03900 (C4J98_0780)	nadC	875600..876448 (-)	849	WP_124431460.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31694.01 Da
• Isoelectric Point: 8.3899

>NTDB_id=279377 C4J98_RS03875 WP_124431457.1 872189..873055(-) (pilD) [Pseudomonas orientalis strain 8B]
MSGLLGEQPWAFVGMALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPAAPVGPVYNLMRPNSCCPRCDQPIRPW
ENIPLLSYLMLKGRCTHCRATISARYPLTELACALISATVAWHVGFGWQAGAVMLLSWGLLGMSLIDVDHQLLPDAIVLP
LLWLGLILNSLGLLATLPDALWGAVFGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
AGLLLMRWRKTQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=279377 C4J98_RS03875 WP_124431457.1 872189..873055(-) (pilD) [Pseudomonas orientalis strain 8B]
TTGAGCGGGTTGCTGGGCGAGCAGCCCTGGGCGTTTGTCGGCATGGCGCTGGTGCTGGGCCTGATCGTCGGCAGTTTTCT
CAATGTGCTGGTATGGCGCCTGCCCAAGATGCTCGAGCGCGAATGGCGCGCCCAGGCCCATGAGATCCTCGGCCTGCCTG
CCGCGCCAGTGGGGCCGGTCTATAACCTGATGCGCCCGAACTCATGCTGCCCGCGCTGCGACCAGCCGATTCGCCCCTGG
GAAAATATCCCCCTGCTCAGCTACCTGATGCTCAAGGGGCGTTGCACCCATTGCCGTGCAACCATCAGCGCGCGCTATCC
CCTCACCGAACTGGCCTGTGCGCTGATATCCGCCACCGTCGCCTGGCACGTCGGTTTTGGCTGGCAGGCCGGCGCGGTGA
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGACGTGGATCACCAACTGCTGCCGGATGCCATAGTGTTGCCG
CTGCTATGGCTGGGACTTATCCTCAACAGCCTGGGCCTGCTGGCGACGTTGCCCGATGCGTTATGGGGCGCGGTGTTCGG
TTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGCGACTTCAAGC
TATTGGCGCTGCTGGGTGCCTGGGGCGGCTGGCAGATACTGCCGATGACGCTGCTGATGGCGTCACTGCTCGGCGTGTTT
GCCGGGCTGCTACTGATGCGCTGGCGCAAGACGCAGGTGTCGGCACCGATGCCATTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.5	97.222	0.51
pilD	Vibrio campbellii strain DS40M4	48.399	97.569	0.472
pilD	Neisseria gonorrhoeae MS11	48.148	93.75	0.451
pilD	Acinetobacter baumannii D1279779	45.421	94.792	0.431
pilD	Acinetobacter nosocomialis M2	45.421	94.792	0.431