Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PNUC_RS09865 Genome accession   NC_009379
Coordinates   1981652..1982107 (-) Length   151 a.a.
NCBI ID   WP_011903738.1    Uniprot ID   A4T051
Organism   Polynucleobacter asymbioticus QLW-P1DMWA-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1976652..1987107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNUC_RS09850 (Pnuc_1900) ilvA 1978285..1979805 (+) 1521 WP_011903735.1 threonine ammonia-lyase, biosynthetic -
  PNUC_RS09855 (Pnuc_1901) - 1979817..1980734 (+) 918 WP_011903736.1 5'-nucleotidase -
  PNUC_RS09860 (Pnuc_1902) queF 1980752..1981579 (+) 828 WP_011903737.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  PNUC_RS09865 (Pnuc_1903) ssb 1981652..1982107 (-) 456 WP_011903738.1 single-stranded DNA-binding protein Machinery gene
  PNUC_RS09870 (Pnuc_1904) - 1982189..1983373 (-) 1185 WP_011903739.1 MFS transporter -
  PNUC_RS09875 (Pnuc_1905) uvrA 1983411..1986299 (+) 2889 WP_011903740.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16260.13 Da        Isoelectric Point: 5.9393

>NTDB_id=27928 PNUC_RS09865 WP_011903738.1 1981652..1982107(-) (ssb) [Polynucleobacter asymbioticus QLW-P1DMWA-1]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYARSKPAEQSAPSASNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=27928 PNUC_RS09865 WP_011903738.1 1981652..1982107(-) (ssb) [Polynucleobacter asymbioticus QLW-P1DMWA-1]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTCGGACGTGATCCAGAAACGCGTTACATGCCAAGCGGCGACGC
CGTTACAAATATTTCAGTAGCAACTTCAGACCGCTACAAAGACAAACAAACTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGCGTTGCATTCTTTGGCAAGCTTGCAGAAATCGCTGGTCAGTACCTTAAAAAAGGTTCACAGGTTTATGTTGAAGGT
CGTTTGCGCACCCGAAAATGGACTGACGCTAGTGGTCAAGAAAAATATTCCACTGAGATCGTTGCAGAAACTATGCAAAT
GCTTGGTGGTAAGCCAGTTGGCGGAAGTGGTGATGGTGGCGAAAGCTATGCGCGTTCAAAGCCGGCTGAGCAGTCTGCTC
CATCTGCATCGAATGCTGCATCACTTGGTGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4T051

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536
  ssb Neisseria meningitidis MC58

45.455

100

0.53

Multiple sequence alignment