Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C4K40_RS30485 Genome accession   NZ_CP027705
Coordinates   6582173..6583666 (+) Length   497 a.a.
NCBI ID   WP_053133690.1    Uniprot ID   -
Organism   Pseudomonas sp. CMR5c     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6577173..6588666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K40_RS30455 (C4K40_6169) - 6577793..6578494 (+) 702 WP_053133693.1 HAD family hydrolase -
  C4K40_RS30460 (C4K40_6170) sutA 6578572..6578895 (-) 324 WP_022641802.1 transcriptional regulator SutA -
  C4K40_RS30465 (C4K40_6171) - 6578997..6579422 (-) 426 WP_022641803.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C4K40_RS30470 (C4K40_6172) - 6579632..6580969 (-) 1338 WP_031320686.1 ammonium transporter -
  C4K40_RS30475 (C4K40_6173) glnK 6581005..6581343 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  C4K40_RS30480 (C4K40_6174) - 6581755..6582015 (+) 261 WP_022641805.1 accessory factor UbiK family protein -
  C4K40_RS30485 (C4K40_6175) comM 6582173..6583666 (+) 1494 WP_053133690.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C4K40_RS30490 (C4K40_6176) - 6583671..6584249 (-) 579 WP_022641812.1 TetR/AcrR family transcriptional regulator -
  C4K40_RS30495 (C4K40_6177) - 6584276..6585289 (+) 1014 WP_031320688.1 ABC transporter six-transmembrane domain-containing protein -
  C4K40_RS30500 (C4K40_6178) - 6585293..6586261 (-) 969 WP_031320689.1 Ca2+-dependent phosphoinositide-specific phospholipase C -
  C4K40_RS32350 - 6586379..6587239 (-) 861 WP_372238142.1 methyl-accepting chemotaxis protein -
  C4K40_RS32355 - 6587267..6588325 (-) 1059 Protein_6018 Cache 3/Cache 2 fusion domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52712.60 Da        Isoelectric Point: 7.5211

>NTDB_id=278931 C4K40_RS30485 WP_053133690.1 6582173..6583666(+) (comM) [Pseudomonas sp. CMR5c]
MSLAIIHSRAQMGVQAPAVSVEVHLANGLPSLTLVGLPETAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASQQLPATALDRVECLGELALSGAVRPVRGVLPAALAARDAGHALLVPRANAEEACLASGLSVIAVDHL
LEAAAHLNGQAPIPACVSQGLPHDRAPYPDLRDVQGQLAAKRALLVAAAGAHNLLFCGPPGTGKTLLASRLPGLLPPLQE
HEALEVAAIQSVSSPAPLDHWPQRPFRQPHHSASSAALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIVIARARERVQFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPAPQP
GNDSASAADLVACARDLQLRRQGCTNALLDLPGLARHCRLSTTDERWLEAACENLGLSLRAAHRLLKVARTLADLEQATA
IGREHLAEALHYRHGSG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=278931 C4K40_RS30485 WP_053133690.1 6582173..6583666(+) (comM) [Pseudomonas sp. CMR5c]
ATGTCCCTGGCCATCATCCACAGCCGCGCCCAGATGGGCGTACAGGCTCCGGCCGTCAGTGTCGAAGTGCACCTGGCCAA
CGGCCTGCCGAGCCTGACCCTGGTGGGGCTGCCCGAAACCGCGGTCAAGGAAAGCAAGGACCGGGTCCGCAGCGCGATCC
TCAACGCCGGCTTCGACTTCCCCGCCCGGCGCATCACCCTCAACCTGGCTCCCGCCGACCTGCCCAAGGACGGTGGACGC
TTCGACCTGGCGATCGCCCTGGGCATCCTCGCGGCCAGCCAGCAACTACCGGCCACGGCGCTGGACCGCGTCGAGTGCCT
GGGCGAGTTGGCGTTGTCCGGGGCCGTGCGCCCGGTGCGCGGCGTGCTGCCGGCGGCCCTGGCAGCACGGGATGCCGGCC
ATGCCTTGCTGGTGCCCCGGGCCAATGCCGAGGAAGCCTGCCTGGCCTCGGGCCTGAGCGTGATCGCGGTCGACCATTTG
CTGGAGGCGGCGGCCCATCTCAACGGGCAGGCGCCGATCCCGGCCTGCGTCAGCCAGGGCCTGCCCCATGACCGCGCGCC
CTACCCCGACCTGCGCGACGTCCAGGGCCAGCTGGCCGCCAAGCGGGCCCTGCTGGTGGCTGCGGCCGGGGCCCACAACC
TGCTGTTCTGCGGCCCGCCCGGCACCGGCAAGACCCTGTTGGCCAGCCGCCTGCCCGGCCTGCTGCCACCGCTGCAAGAA
CACGAGGCCCTTGAGGTAGCAGCCATCCAGTCGGTGAGCAGCCCCGCCCCGCTGGACCACTGGCCACAGCGTCCGTTCCG
CCAACCCCATCACTCGGCGTCGAGCGCGGCTCTGGTGGGCGGTGGCTCGAAACCGCAGCCCGGGGAAATCACCCTGGCCC
ACCATGGCGTGCTGTTTCTCGACGAGCTACCGGAGTTCGACCGCAAGGTCCTGGAGGTTCTACGCGAGCCCATGGAATCC
GGGCAGATCGTTATCGCCCGGGCCCGCGAGCGGGTGCAGTTTCCGGCACGCTTCCAGTTGGTGGCGGCGATGAACCCCTG
CCCCTGTGGATACCTGGGCGAACCCAGTGGCCGCTGCCGTTGCACGCCGGAGCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGCCCGCTGCTGGATCGCATCGACCTGCACCTGACCGTCGCCCGCGAGGCCACGGCCCTGAACCCCGCGCCGCAACCG
GGTAACGACAGTGCCAGCGCCGCCGACCTGGTGGCCTGTGCGCGCGACCTGCAACTGCGGCGCCAGGGCTGCACCAACGC
CCTGCTCGACCTGCCCGGCCTGGCGCGCCATTGCAGGTTATCCACAACCGACGAGCGCTGGCTGGAAGCAGCCTGCGAGA
ACCTCGGCCTGTCGCTGCGCGCGGCCCACCGCCTGCTCAAGGTGGCCCGGACCCTGGCCGACCTGGAACAGGCCACCGCC
ATCGGCCGCGAGCACCTGGCGGAGGCACTGCACTATCGCCACGGCAGCGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.162

99.598

0.559
  comM Glaesserella parasuis strain SC1401

54.8

100

0.551
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Haemophilus influenzae Rd KW20

54.6

100

0.549
  comM Legionella pneumophila str. Paris

49.112

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.112

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.622

100

0.451

Multiple sequence alignment