Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C6571_RS07690 Genome accession   NZ_CP027669
Coordinates   1644341..1644871 (+) Length   176 a.a.
NCBI ID   WP_106448110.1    Uniprot ID   A0A2S0N4R6
Organism   Simplicispira suum strain SC1-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1639341..1649871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6571_RS07680 (C6571_07680) - 1641598..1642782 (+) 1185 WP_106448108.1 MFS transporter -
  C6571_RS07685 (C6571_07685) - 1642797..1644179 (-) 1383 WP_106448109.1 chloride channel protein -
  C6571_RS07690 (C6571_07690) ssb 1644341..1644871 (+) 531 WP_106448110.1 single-stranded DNA-binding protein Machinery gene
  C6571_RS07695 (C6571_07695) - 1645245..1645724 (-) 480 WP_106446161.1 hypothetical protein -
  C6571_RS07700 (C6571_07700) - 1645842..1646315 (-) 474 WP_106446162.1 Spy/CpxP family protein refolding chaperone -
  C6571_RS07705 (C6571_07705) - 1646312..1646764 (-) 453 WP_106446163.1 anti-sigma factor family protein -
  C6571_RS07710 (C6571_07710) - 1646779..1647333 (-) 555 WP_106446164.1 sigma-70 family RNA polymerase sigma factor -
  C6571_RS07715 (C6571_07715) - 1647461..1647793 (-) 333 WP_146139320.1 DUF4148 domain-containing protein -
  C6571_RS07720 (C6571_07720) mnmA 1648116..1649249 (-) 1134 WP_106446166.1 tRNA 2-thiouridine(34) synthase MnmA -
  C6571_RS07725 (C6571_07725) - 1649236..1649724 (-) 489 WP_106446167.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18900.96 Da        Isoelectric Point: 6.4900

>NTDB_id=278853 C6571_RS07690 WP_106448110.1 1644341..1644871(+) (ssb) [Simplicispira suum strain SC1-8]
MASVNKVIIVGNLGRDPEMRTFPNGDKVANVTIATTDKWKDKQSGEMREATEWHRVVFNFRLAEIVEQYLRKGSQVYVEG
SLRTRKWTDQAGVEKYTTEIRADSMQMLGSRAGSGGGQGGGYEDGGHGAQGGDGGGYEAPRRAAPPASRAPAARPAPAPA
PRAASGFDDMDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=278853 C6571_RS07690 WP_106448110.1 1644341..1644871(+) (ssb) [Simplicispira suum strain SC1-8]
ATGGCATCCGTGAACAAAGTCATCATCGTCGGCAACCTGGGCCGCGACCCCGAAATGCGCACCTTCCCCAATGGCGACAA
GGTGGCCAACGTCACCATCGCCACCACCGACAAGTGGAAAGACAAACAGTCGGGCGAGATGCGCGAAGCGACCGAATGGC
ACCGCGTGGTGTTCAACTTCCGGCTGGCAGAAATCGTCGAGCAGTACCTGCGCAAGGGCTCACAGGTCTATGTGGAAGGG
AGCCTGCGTACGCGCAAGTGGACCGACCAGGCCGGCGTTGAAAAGTACACCACCGAGATCCGCGCCGACAGCATGCAGAT
GCTGGGCAGCCGTGCCGGGTCTGGTGGCGGGCAAGGCGGCGGCTACGAGGATGGCGGGCACGGCGCACAAGGAGGCGACG
GTGGTGGCTACGAAGCCCCGCGCCGCGCCGCGCCGCCCGCGTCGCGCGCTCCTGCTGCCCGTCCCGCCCCGGCGCCAGCG
CCGCGTGCGGCGTCGGGCTTTGACGACATGGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0N4R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.591

100

0.551
  ssb Vibrio cholerae strain A1552

46.524

100

0.494
  ssb Neisseria meningitidis MC58

44.199

100

0.455
  ssb Neisseria gonorrhoeae MS11

42.458

100

0.432

Multiple sequence alignment