Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C6571_RS06430 Genome accession   NZ_CP027669
Coordinates   1356341..1357888 (-) Length   515 a.a.
NCBI ID   WP_106445959.1    Uniprot ID   A0A2S0MZ54
Organism   Simplicispira suum strain SC1-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1351341..1362888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6571_RS19465 - 1351536..1354010 (-) 2475 WP_146139306.1 P-loop NTPase fold protein -
  C6571_RS06420 (C6571_06420) - 1354830..1355738 (-) 909 WP_106445958.1 ProQ/FINO family protein -
  C6571_RS06425 (C6571_06425) - 1356004..1356273 (+) 270 WP_211300705.1 hypothetical protein -
  C6571_RS06430 (C6571_06430) comM 1356341..1357888 (-) 1548 WP_106445959.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C6571_RS06435 (C6571_06435) - 1358060..1358803 (+) 744 WP_106445960.1 TorF family putative porin -
  C6571_RS06440 (C6571_06440) glnK 1358817..1359155 (+) 339 WP_106445961.1 P-II family nitrogen regulator -
  C6571_RS06445 (C6571_06445) amt 1359190..1360608 (+) 1419 WP_106445962.1 ammonium transporter -
  C6571_RS06450 (C6571_06450) - 1360721..1361677 (+) 957 WP_106445963.1 SMP-30/gluconolactonase/LRE family protein -
  C6571_RS06455 (C6571_06455) - 1361789..1362025 (+) 237 WP_106448078.1 hypothetical protein -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 54163.04 Da        Isoelectric Point: 8.6782

>NTDB_id=278852 C6571_RS06430 WP_106445959.1 1356341..1357888(-) (comM) [Simplicispira suum strain SC1-8]
MSLALVQSRALLGLRAPPVTVEVHLANGLPSFTLVGLAEVEVKEARERVRSALQNAGLEFPHNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDGARLAGWEFAGELSLSGELRAVRGALATSLALHTAETKGEAAGVRLVLPPGSAEEAALVPGS
AVWRARHLLDVVRAFLPTPLDDELPADAGWQRMAHQASQAHAHYADLADVKGQAAARRALEIAAAGGHSLLLMGPPGSGK
SMLAQRFAGILPDMTVQQALESAAVASLAGRFAIERWAERPTSSPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDELP
EFPRAALEALREPLETGHITIARAAQRAEFPARFQLIAAMNPCPCGFLGSAQRACRCSPDQVAHYQARLSGPLLDRIDLH
VEVPALPATDLLGAPPGEASAAVRERVVRARARALARQGCANQALQGQKIDTQIALDAAAAQFLQTAAARLGWSARATHR
ALKVARTIADLAGAQSTQIAHVAEAMQYRRALRGH

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=278852 C6571_RS06430 WP_106445959.1 1356341..1357888(-) (comM) [Simplicispira suum strain SC1-8]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGGCTGCGCGCGCCGCCGGTCACCGTCGAGGTGCACCTGGCCAA
TGGATTGCCCAGCTTCACGCTGGTCGGCCTGGCCGAGGTAGAAGTGAAAGAGGCGCGCGAGCGCGTGCGCTCGGCGCTGC
AGAACGCGGGGCTCGAATTCCCGCACAACAAGCGCATCACCGTGAACCTGGCGCCGGCCGATCTGCCCAAGGATTCCGGG
CGCTTTGATTTGCCCATTGCGCTCGGCATCCTGGCCGCCAGCGGGCAGATCGACGGCGCCCGCCTGGCCGGTTGGGAATT
TGCCGGCGAGCTTTCGCTCTCGGGCGAGCTGCGCGCAGTGCGTGGCGCCCTCGCGACCAGCCTCGCCCTGCACACCGCTG
AAACGAAAGGCGAAGCTGCAGGCGTGCGCCTGGTGCTGCCGCCAGGAAGCGCCGAAGAAGCCGCGCTGGTGCCCGGCAGC
GCCGTCTGGCGCGCGCGCCATCTGCTCGATGTGGTGCGTGCCTTTCTGCCCACGCCGCTGGACGACGAATTGCCAGCCGA
CGCCGGCTGGCAGCGCATGGCGCACCAGGCGTCGCAGGCGCACGCGCACTACGCCGATCTGGCCGATGTCAAAGGCCAGG
CTGCAGCCCGGCGAGCGCTGGAGATTGCCGCAGCTGGTGGCCACAGCCTGCTGCTCATGGGGCCGCCCGGCTCGGGCAAA
TCCATGCTGGCGCAGCGCTTTGCCGGCATCCTGCCGGACATGACGGTGCAGCAAGCGCTGGAGAGCGCCGCCGTCGCCAG
CCTGGCCGGCCGTTTTGCGATTGAGCGCTGGGCCGAGCGGCCTACATCAAGCCCGCACCACACCGCGAGTGCCGTGGCCT
TGGTGGGCGGTGGCTCGCCGCCCCGGCCGGGCGAAATTTCGCTCGCGCACCACGGCGTCTTGTTTTTGGACGAACTTCCT
GAGTTTCCGCGTGCCGCCCTGGAGGCCCTGCGCGAACCGCTGGAAACCGGCCACATCACCATTGCCCGCGCCGCGCAGCG
GGCCGAGTTCCCGGCGCGCTTTCAGCTGATTGCGGCCATGAACCCCTGCCCCTGCGGCTTCCTGGGCTCGGCGCAGCGCG
CCTGCCGCTGTTCGCCCGACCAGGTGGCGCACTACCAGGCGCGCCTCTCGGGCCCGCTGCTCGACCGCATCGACCTGCAT
GTGGAAGTGCCCGCCCTGCCGGCCACCGACTTGCTCGGCGCCCCGCCCGGCGAGGCCAGCGCCGCCGTGCGCGAGCGCGT
GGTACGCGCCCGCGCCCGCGCTCTGGCGCGCCAGGGCTGCGCCAACCAGGCGCTGCAGGGGCAGAAAATCGACACGCAGA
TCGCGCTCGACGCCGCCGCCGCCCAGTTCCTGCAAACCGCTGCCGCGCGCCTGGGCTGGTCCGCCCGGGCCACGCACCGC
GCGCTGAAAGTGGCGCGCACCATTGCCGACCTGGCTGGCGCGCAGAGCACGCAGATCGCCCATGTGGCCGAAGCCATGCA
GTACCGGCGCGCCCTGCGCGGCCACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(206-409)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(417-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0MZ54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.938

100

0.52
  comM Glaesserella parasuis strain SC1401

51.257

100

0.515
  comM Haemophilus influenzae Rd KW20

50.674

100

0.511
  comM Vibrio campbellii strain DS40M4

50.096

100

0.505
  comM Legionella pneumophila str. Paris

48.643

100

0.487
  comM Legionella pneumophila strain ERS1305867

48.643

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.607

99.806

0.425

Multiple sequence alignment