Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AM379_RS07280 Genome accession   NZ_CP027618
Coordinates   1486551..1488071 (+) Length   506 a.a.
NCBI ID   WP_106503572.1    Uniprot ID   -
Organism   Enterobacter cloacae complex sp. FDA-CDC-AR_0132     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1481551..1493071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM379_RS07255 (AM379_07250) ilvE 1483119..1484048 (-) 930 WP_025202772.1 branched-chain-amino-acid transaminase -
  AM379_RS07260 (AM379_07255) ilvM 1484067..1484330 (-) 264 WP_014172166.1 acetolactate synthase 2 small subunit -
  AM379_RS07265 (AM379_07260) ilvG 1484327..1485973 (-) 1647 WP_106503571.1 acetolactate synthase 2 catalytic subunit -
  AM379_RS07270 (AM379_07265) ilvX 1485976..1486026 (-) 51 WP_102046757.1 peptide IlvX -
  AM379_RS07275 (AM379_07270) ilvL 1486113..1486211 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AM379_RS07280 (AM379_07275) comM 1486551..1488071 (+) 1521 WP_106503572.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AM379_RS07285 (AM379_07280) - 1488099..1488437 (-) 339 WP_014172168.1 DUF413 domain-containing protein -
  AM379_RS07290 (AM379_07285) hdfR 1488556..1489377 (+) 822 WP_014172169.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54958.99 Da        Isoelectric Point: 7.1540

>NTDB_id=278521 AM379_RS07280 WP_106503572.1 1486551..1488071(+) (comM) [Enterobacter cloacae complex sp. FDA-CDC-AR_0132]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNSCRLGAYEFIGELALTGALRGVPGAISGALEAIRAGRQIIVANENGAEVSLIAERGCLLAGHL
QEVCAYLEGQHVLSEPEESGDPLAESPDDLSDIYGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVGSVSLQKQWRRRPFRSPHHSASLAAMVGGGTIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRARAKISYPARFQLVAAMNPSPSGHYQGNHNRSTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQSSARG
ESTVEVRERVIAAQARQYMRQHKLNARLDNAEIRQFCPLKTEDSCWLEDTLTRFGLSIRAWQRLIKVARTIADVEKCPDI
ETRHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=278521 AM379_RS07280 WP_106503572.1 1486551..1488071(+) (comM) [Enterobacter cloacae complex sp. FDA-CDC-AR_0132]
ATGTCACTGTCAGTTGTTTATACCCGTGCGGCCATTGGAGTAAAAGCACCGCTTATTTCGGTAGAAGTTCATCTCAGCAA
CGGGCTGCCCGGGCTGACGCTGGTTGGATTGCCGGAGACCACGGTAAAGGAAGCCAGAGATCGGGTGCGCAGTGCGATTA
TTAATAGCGGTTATACCTTTCCGGCAAAGAAAATCACCATCAACCTTGCGCCTGCAGACTTGCCTAAAGAGGGAGGGCGA
TATGATTTACCTATCGCTATAGCGCTCCTCGCCGCCTCTGAGCAGCTTAACAGCTGCAGACTAGGCGCATATGAGTTCAT
CGGTGAACTGGCGCTCACAGGCGCGCTGAGGGGCGTTCCTGGTGCCATCTCGGGTGCGCTGGAGGCCATTCGCGCAGGTC
GACAAATCATTGTTGCCAATGAAAATGGTGCAGAAGTGAGCCTGATAGCCGAGAGAGGATGTCTGCTAGCCGGGCATTTA
CAGGAAGTGTGCGCGTATCTTGAGGGGCAACATGTGCTGTCAGAGCCGGAAGAATCAGGCGATCCCCTGGCAGAAAGCCC
GGACGATCTGAGCGATATTTACGGCCAGGAGCAGGGGAAGCGGGCGCTGGAGATCACTGCTGCTGGCGGACATAACCTGT
TGCTGATTGGCCCACCGGGTACAGGAAAAACGATGCTGGCGAGCAGGTTGAATGGTTTACTGCCTCCACTTAATAACCAT
GAAGCGCTGGAAAGCGCGGCGATATTTAGTCTGGTGGGTTCAGTGTCATTGCAAAAACAGTGGCGACGTCGCCCGTTTCG
CTCTCCGCACCACAGTGCCTCACTGGCGGCCATGGTCGGCGGTGGCACCATACCAGGGCCGGGAGAGATCTCTCTGGCGC
ACAACGGCATCCTGTTTCTGGATGAACTGCCTGAATTTGAACGCCGCGTTCTGGATGCGCTGAGGGAGCCCATCGAATCG
GGTGAGATCCATATCTCCCGTGCACGCGCCAAAATAAGCTATCCCGCGCGGTTCCAGCTGGTAGCGGCAATGAACCCCAG
CCCATCGGGCCATTATCAGGGAAACCACAATCGCTCCACGCCTGAACAGACGCTGCGCTACCTGGGGAAGTTATCTGGTC
CTTTCCTGGATCGTTTCGATTTGTCGCTGGAAATCCCCTTGCCTCCTCCCGGCCTGCTCAGCCAGAGCAGCGCCAGAGGA
GAGAGTACGGTGGAGGTTCGCGAGCGGGTTATCGCCGCGCAGGCCCGGCAGTATATGCGTCAACATAAGCTGAATGCCCG
TCTGGATAACGCTGAGATTCGGCAGTTTTGTCCTCTTAAGACTGAAGATTCATGCTGGCTGGAGGATACGTTGACGCGCT
TTGGGCTTTCCATTCGCGCATGGCAGCGTCTTATAAAAGTCGCCCGCACCATCGCCGATGTGGAAAAGTGCCCTGACATT
GAGACGCGGCATCTGCAGGAAGCGTTAAGCTATCGTGCGATCGATCGCTTGCTCCTGCACCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.159

99.209

0.597
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Haemophilus influenzae Rd KW20

57.76

100

0.581
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441

Multiple sequence alignment