Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C6Y56_RS02000 Genome accession   NZ_CP027561
Coordinates   451302..452366 (+) Length   354 a.a.
NCBI ID   WP_169428504.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain G7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446302..457366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS01990 (C6Y56_02010) - 447131..448399 (+) 1269 WP_169428502.1 malic enzyme-like NAD(P)-binding protein -
  C6Y56_RS01995 (C6Y56_02015) - 448638..451085 (-) 2448 WP_169428503.1 penicillin-binding protein 1A -
  C6Y56_RS02000 (C6Y56_02020) comM 451302..452366 (+) 1065 WP_169428504.1 pilus assembly protein PilM Machinery gene
  C6Y56_RS02005 (C6Y56_02025) - 452366..452932 (+) 567 WP_169428505.1 PilN domain-containing protein -
  C6Y56_RS02010 (C6Y56_02030) pilO 452929..453552 (+) 624 WP_169428506.1 type 4a pilus biogenesis protein PilO -
  C6Y56_RS02015 (C6Y56_02035) - 453549..454073 (+) 525 WP_169428507.1 pilus assembly protein PilP -
  C6Y56_RS02020 (C6Y56_02040) pilQ 454087..456165 (+) 2079 WP_169428508.1 type IV pilus secretin PilQ Machinery gene
  C6Y56_RS02025 (C6Y56_02045) aroK 456170..456688 (+) 519 WP_011332081.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38191.72 Da        Isoelectric Point: 4.7624

>NTDB_id=278120 C6Y56_RS02000 WP_169428504.1 451302..452366(+) (comM) [Pseudomonas fluorescens strain G7]
MLGLFNKKTNTLLGIDISSTSVKLLELSRQGERYRVEAYAVEPLPANAVVEKNIAELEGVGHALSRVLVKARTGLKTVAV
AVAGSAVITKVIEMDAGLSEDELENQLKIEADQYIPYPLDEVAIDFEVQGISPRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQERLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEERLGTPTQVANP
FSDMSLSNKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=278120 C6Y56_RS02000 WP_169428504.1 451302..452366(+) (comM) [Pseudomonas fluorescens strain G7]
GTGCTAGGACTCTTCAATAAAAAGACCAATACGTTGCTGGGGATCGATATCAGCTCCACTTCGGTGAAGCTGCTGGAGCT
GAGCCGTCAGGGCGAGCGCTACCGGGTCGAGGCGTACGCGGTGGAGCCGTTGCCGGCCAATGCCGTGGTCGAAAAGAACA
TCGCCGAACTCGAAGGCGTCGGGCACGCCCTGTCCCGGGTGCTGGTCAAGGCCCGCACCGGGCTGAAAACCGTCGCAGTG
GCGGTAGCCGGTTCTGCCGTGATCACCAAGGTCATCGAGATGGACGCCGGCTTGTCCGAGGACGAGCTGGAAAACCAGCT
CAAGATCGAAGCCGACCAGTACATTCCCTATCCGCTGGACGAAGTCGCCATCGATTTTGAAGTCCAGGGCATTTCGCCGC
GCAACCCCGAGCGCGTCAACGTGCTGCTGGCCGCCTGTCGCAAGGAAAACGTCGAAGTCCGTGAGGCGGCCCTGGCCCTT
GCCGGCTTGACTGCGCGGGTGGTAGACGTCGAGGCCTATGCGCTGGAACGCTCCTTCGGCCTGCTGGCCACGCAACTGGC
GGCCTCCCAGGAGCGCCTGACGGTCGCGGTGGTCGACATCGGCGCGACCATGACCACCCTCAGCGTCCTGCATAACGGGC
GGATCATCTATACCCGGGAGCAACTGTTCGGCGGTCGCCAGCTGACCGAGGAAATCCAGCGCCGCTATGGCCTGACCCTC
GAGCAGGCCGGGCTGGCCAAGAAGCAGGGCGGGCTGCCGGACGATTACGTCAGCGAAGTCCTGCAACCGTTTCGCGAGGC
GCTGGTACAGCAGGTTTCACGTTCACTGCAGTTCTTCTTCGCCTCCGGCCAGTACAACGCGGTCGATCACATTCTGCTGG
CCGGCGGCACGGCCTCGGTGCCGGGGCTGGACCGGCTGATCGAAGAGCGACTGGGCACACCGACCCAGGTCGCCAATCCG
TTTTCCGACATGTCCTTGAGCAACAAGGTCAACGCCGGAGCCCTGGCGAGTGACGCGCCGGCCCTGATGATTGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.215

100

0.562
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

54.237

100

0.542
  pilM Legionella pneumophila strain ERS1305867

49.153

100

0.492

Multiple sequence alignment