Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AM467_RS01325 Genome accession   NZ_CP027530
Coordinates   280472..281959 (-) Length   495 a.a.
NCBI ID   WP_000010467.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AR_0088     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 275472..286959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM467_RS20745 - 276159..276329 (+) 171 WP_002009550.1 hypothetical protein -
  AM467_RS01305 (AM467_01305) - 276386..277198 (+) 813 WP_000975212.1 TorF family putative porin -
  AM467_RS01310 (AM467_01310) - 277241..278119 (-) 879 WP_000772980.1 dihydrodipicolinate synthase family protein -
  AM467_RS01315 (AM467_01315) - 278135..278911 (-) 777 WP_000845034.1 aldolase -
  AM467_RS01320 (AM467_01320) - 279023..280457 (+) 1435 Protein_247 PLP-dependent aminotransferase family protein -
  AM467_RS01325 (AM467_01325) comM 280472..281959 (-) 1488 WP_000010467.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AM467_RS01330 (AM467_01330) - 282025..282252 (-) 228 WP_000894500.1 accessory factor UbiK family protein -
  AM467_RS01335 (AM467_01335) glnK 282532..282870 (+) 339 WP_000780327.1 P-II family nitrogen regulator -
  AM467_RS01340 (AM467_01340) - 282928..284325 (+) 1398 WP_000738520.1 ammonium transporter -
  AM467_RS01345 (AM467_01345) nrdR 284484..284942 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  AM467_RS01350 (AM467_01350) ribD 284958..286043 (+) 1086 WP_106421621.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54554.43 Da        Isoelectric Point: 7.2551

>NTDB_id=277753 AM467_RS01325 WP_000010467.1 280472..281959(-) (comM) [Acinetobacter baumannii strain AR_0088]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQQSAYSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=277753 AM467_RS01325 WP_000010467.1 280472..281959(-) (comM) [Acinetobacter baumannii strain AR_0088]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCTGAAGCAGCCGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAACCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCATGCGCAGCAAAGTGCCTATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGAGCAGCTCGGCAAATTACCTACCCTGCAAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAATCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACAACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGAGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Legionella pneumophila strain ERS1305867

49.501

100

0.501
  comM Legionella pneumophila str. Paris

49.501

100

0.501
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.4

100

0.469

Multiple sequence alignment