Detailed information NTG0277385

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: MGAS28085_RS05120
• Genome accession: NZ_CP032666
• Coordinates: 996216..996896 (-)
• Length: 226 a.a.
• NCBI ID: WP_127821086.1
• Uniprot ID: -
• Organism: Streptococcus pyogenes strain MGAS28085
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 991216..1001896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MGAS28085_RS05090 (MGAS28085_05090)	-	991454..992032 (+)	579	WP_002989824.1	CYTH domain-containing protein	-
MGAS28085_RS05095 (MGAS28085_05095)	-	992172..993152 (+)	981	WP_002989827.1	ribose-phosphate diphosphokinase	-
MGAS28085_RS05100 (MGAS28085_05100)	-	993149..994276 (+)	1128	WP_002989829.1	cysteine desulfurase family protein	-
MGAS28085_RS05105 (MGAS28085_05105)	-	994266..994613 (+)	348	WP_002989831.1	DUF1831 domain-containing protein	-
MGAS28085_RS05110 (MGAS28085_05110)	-	994865..995509 (+)	645	WP_002984705.1	redox-sensing transcriptional repressor Rex	-
MGAS28085_RS05115 (MGAS28085_05115)	-	995519..996214 (+)	696	WP_011284775.1	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	-
MGAS28085_RS05120 (MGAS28085_05120)	radC	996216..996896 (-)	681	WP_127821086.1	DNA repair protein RadC	Machinery gene
MGAS28085_RS05125 (MGAS28085_05125)	-	996945..998072 (-)	1128	WP_002994399.1	AI-2E family transporter	-
MGAS28085_RS05130 (MGAS28085_05130)	-	998252..998866 (-)	615	WP_002984715.1	SGNH/GDSL hydrolase family protein	-
MGAS28085_RS05135 (MGAS28085_05135)	-	999029..1000561 (-)	1533	WP_021341191.1	ClC family H(+)/Cl(-) exchange transporter	-
MGAS28085_RS05140 (MGAS28085_05140)	aphA	1000739..1001470 (-)	732	WP_002984720.1	acid phosphatase AphA	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 25803.02 Da
• Isoelectric Point: 7.3456

>NTDB_id=277385 MGAS28085_RS05120 WP_127821086.1 996216..996896(-) (radC) [Streptococcus pyogenes strain MGAS28085]
MYSIKCDDNKAMPRERLMRLGAESLSNQELLAILLRTGNKEKYVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKA
IEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLDNQNRIFEEKTIFIGTVRRSLAEPREILY
YACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Nucleotide

• Length: 681 bp

>NTDB_id=277385 MGAS28085_RS05120 WP_127821086.1 996216..996896(-) (radC) [Streptococcus pyogenes strain MGAS28085]
ATGTATTCTATAAAATGTGATGATAATAAAGCCATGCCAAGAGAACGTTTGATGCGACTAGGAGCAGAGTCTCTAAGTAA
TCAAGAATTATTAGCAATTTTATTACGAACAGGTAATAAAGAAAAGTATGTCTTAGAGCTGTCATCCTATCTTTTATCGC
ATTTAGACAGTCTGGCAGATTTTAAAAAGATGTCTTTGCAAGAATTACAACATTTGGCAGGTATAGGAAAAGTTAAAGCG
ATTGAAATTAAAGCTATGATTGAGTTGGTTTCCCGAATTTTAGCGACCGATAAGACATTAACTGATAGCGTATTAACCAG
TGTTCAGGTCGCTGAAAAAATGATGGCAGCTTTAGGAGATAAAAAACAAGAGCATTTAGTCGTATTGTATTTAGATAATC
AAAATCGTATTTTTGAAGAAAAAACTATTTTTATTGGGACTGTCCGACGTTCACTTGCAGAACCAAGAGAAATTTTATAC
TATGCCTGTAAAAATATGGCGACTAGTCTCATTGTTATTCATAATCATCCTTCAGGAAATATTGAACCTAGTTCTAACGA
TTATTGCTTTACTGAAAAAATAAAACGATCATGTGAAGATTTAGGCATTATCTGTCTAGATCACATTATCGTTAGCTATA
AAGATTATTATAGTTTTCGAGAAAAATCAACCCTTTTTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (107-222)

• UPF0758 N-terminal (UPF0758_N) (10-81)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Streptococcus pneumoniae TIGR4	57.522	100	0.575
radC	Streptococcus pneumoniae R6	57.08	100	0.571
radC	Streptococcus pneumoniae D39	57.08	100	0.571
radC	Streptococcus gordonii str. Challis substr. CH1	55.31	100	0.553
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	42.661	96.46	0.412
radC	Haemophilus influenzae Rd KW20	37.443	96.903	0.363