Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   C6I29_RS13325 Genome accession   NZ_CP027365
Coordinates   2831947..2832657 (-) Length   236 a.a.
NCBI ID   WP_005404626.1    Uniprot ID   A0A2T1J168
Organism   Acinetobacter radioresistens strain DSSKY-A-001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2826947..2837657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I29_RS13305 aroB 2827533..2828618 (-) 1086 WP_005024217.1 3-dehydroquinate synthase -
  C6I29_RS14900 aroK 2828637..2829188 (-) 552 WP_005024215.1 shikimate kinase AroK -
  C6I29_RS13315 pilQ 2829225..2831405 (-) 2181 WP_005024212.1 type IV pilus secretin PilQ Machinery gene
  C6I29_RS13320 pilP 2831423..2831950 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  C6I29_RS13325 comO 2831947..2832657 (-) 711 WP_005404626.1 type 4a pilus biogenesis protein PilO Machinery gene
  C6I29_RS13330 pilN 2832654..2833313 (-) 660 WP_005018044.1 PilN domain-containing protein Machinery gene
  C6I29_RS13335 pilM 2833313..2834371 (-) 1059 WP_005018042.1 pilus assembly protein PilM Machinery gene
  C6I29_RS13340 ponA 2834533..2837079 (+) 2547 WP_034688125.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26946.23 Da        Isoelectric Point: 4.4700

>NTDB_id=276622 C6I29_RS13325 WP_005404626.1 2831947..2832657(-) (comO) [Acinetobacter radioresistens strain DSSKY-A-001]
MSREEFDDLNQEDAKPAKRKMTLEAFLQQFNTLDTHNYGSWPFSVKLTCWIFLFLLVCAIGYFLAIRPKLEAISNAQAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNEQLEQLPKETEIPGLVEDINVAGVSSGLKFKNIRLESEIRQEFFIEQP
IDIQATGDYHAFGSFVSTIAALPRIVTLHDFEITSTQAQNSDIPEVNYAVKAKTYRYVGNNEQPNTTDTPAGGQPQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=276622 C6I29_RS13325 WP_005404626.1 2831947..2832657(-) (comO) [Acinetobacter radioresistens strain DSSKY-A-001]
ATGAGTCGTGAAGAATTTGATGATTTAAACCAGGAAGATGCTAAACCTGCTAAAAGAAAAATGACGCTAGAAGCCTTCCT
GCAACAGTTTAATACTCTGGATACACATAATTACGGCAGCTGGCCTTTTTCAGTCAAACTGACCTGCTGGATATTTCTGT
TTCTGCTGGTTTGTGCAATTGGCTATTTTTTAGCAATTCGCCCCAAACTTGAAGCTATTTCTAATGCGCAGGCACAAGAA
CAGAATCTGTTAAACGAGTTTCGTGAAAAGGACTCTAAACTGCGTAACTTACAGCAATACCAAGCACAACTACAGGAAAT
GGAAGCGAATTTTAATGAACAACTGGAACAGTTGCCTAAAGAAACCGAGATTCCTGGACTGGTTGAAGATATTAACGTTG
CAGGAGTAAGTTCTGGCCTGAAATTTAAAAATATTCGTCTGGAAAGTGAAATTCGGCAGGAATTCTTTATTGAACAGCCA
ATTGATATTCAGGCAACAGGTGATTATCATGCCTTTGGTTCTTTTGTGAGCACTATTGCGGCGCTTCCACGAATTGTAAC
CCTGCATGACTTTGAAATTACCAGTACACAGGCGCAGAACTCAGATATTCCAGAAGTAAATTATGCGGTGAAAGCTAAAA
CATACCGATATGTCGGTAATAATGAGCAGCCAAATACTACGGATACCCCAGCAGGAGGGCAGCCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T1J168

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.755

100

0.703
  pilO Acinetobacter baumannii D1279779

71.946

93.644

0.674

Multiple sequence alignment