Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C6I29_RS00740 Genome accession   NZ_CP027365
Coordinates   160127..161611 (-) Length   494 a.a.
NCBI ID   WP_005017186.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DSSKY-A-001     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 155127..166611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I29_RS00715 - 155832..156212 (-) 381 WP_005017201.1 membrane protein -
  C6I29_RS00720 - 156321..156719 (+) 399 WP_005017197.1 MAPEG family protein -
  C6I29_RS00725 ppa 156838..157374 (+) 537 WP_005017195.1 inorganic diphosphatase -
  C6I29_RS00730 - 157471..158739 (-) 1269 WP_005017192.1 OprD family outer membrane porin -
  C6I29_RS00735 - 159305..160072 (+) 768 WP_005017188.1 TorF family putative porin -
  C6I29_RS00740 comM 160127..161611 (-) 1485 WP_005017186.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C6I29_RS00745 - 161675..161902 (-) 228 WP_005017183.1 accessory factor UbiK family protein -
  C6I29_RS00750 glnK 162174..162512 (+) 339 WP_005017180.1 P-II family nitrogen regulator -
  C6I29_RS00755 - 162571..163953 (+) 1383 WP_005017177.1 ammonium transporter -
  C6I29_RS00760 nrdR 164075..164527 (+) 453 WP_005017176.1 transcriptional regulator NrdR -
  C6I29_RS00765 ribD 164579..165634 (+) 1056 WP_051005726.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54262.59 Da        Isoelectric Point: 8.6572

>NTDB_id=276589 C6I29_RS00740 WP_005017186.1 160127..161611(-) (comM) [Acinetobacter radioresistens strain DSSKY-A-001]
MSFAKIYTRGVLGLHAPSIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPEQSTEQIEFIGELALDGCLRPVSGTLAIAMACQKVRHQLILAEANAMEAAQLPDFQVYGAQHL
KQVCQHLLQQQPLLPVKRKLPEAAQDYKLDLADIKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPPNA
QENLEVASIYSIANVQHPFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTFPANFQLVAAMNPCPCGYAFNQDNRCQCSADAIKRYQNRISGPLLDRIDLHIDVPPLQAHELQQTTPAE
NSDTVRKRVILAYEQQLQRQGCLNQLLSPKQLELHAQLDQSSLRIIEMAQQRLNLSARAYHRVLRVARTIADLALSKEIQ
TSHLSEALSYRSQS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=276589 C6I29_RS00740 WP_005017186.1 160127..161611(-) (comM) [Acinetobacter radioresistens strain DSSKY-A-001]
ATGTCTTTTGCCAAAATTTACACCCGGGGGGTGCTGGGGCTACATGCGCCTTCTATTGAAGTTGAAGTTCATGTGAGTCA
GGGGCTTCCCTCCCTGACTATTGTAGGGCTTCCTGAAGCTGCGGTACGTGAAAGTAAAGATCGGGTTCGCTCGGCGATCA
TTAATAGCGGCTTTCAGTTTCCCACCAAACGTCTTACTATTAATCTGGCTCCTGCCGATTTGCCCAAAGATGGATCACGT
CTAGATCTACCGATTGCGTTGGGAATCTTGGTTGCTTCAGGCCAGCTCCCTGAACAAAGTACAGAACAGATTGAATTTAT
TGGTGAACTGGCTTTAGATGGCTGCTTGCGTCCGGTAAGCGGCACACTGGCAATTGCCATGGCATGTCAAAAAGTACGGC
ATCAGCTGATACTGGCAGAAGCAAATGCAATGGAAGCAGCGCAGCTCCCTGACTTTCAGGTCTACGGAGCACAGCACCTA
AAACAGGTTTGCCAGCATTTACTACAGCAACAGCCATTATTACCGGTTAAAAGGAAACTACCTGAAGCTGCTCAAGATTA
TAAACTGGATTTGGCAGATATTAAGGGGCAACTGCGCCCACGGCGTGCTTTGGAAATTGCAGCAGCAGGCGGTCACTCTC
TACTTTTTAAGGGCCCTCCTGGAACTGGAAAGACCCTGCTGGCTTCAAGGTTACCCAGCATTTTACCTCCGCCCAATGCC
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATGTTCAGCATCCCTTTGGACAACGGCCTTTTCGGGCTCC
ACACCATACTGCATCTGCTATTGCGCTGGTCGGCGGCGGCTCGCAACCCAAGCCTGGTGAAATCACTCTGGCACATTTAG
GTGTTTTATTTCTAGATGAGCTTCCTGAATTTGACCGCAAAGTACTGGAAGTTTTACGTCAGCCACTCGAGTCTAAAGAA
ATTGTTATTTCTCGGGCTTCCCGGCAAATGACTTTTCCGGCCAACTTCCAGTTGGTAGCAGCTATGAATCCTTGTCCATG
TGGTTATGCATTTAATCAGGATAACCGTTGCCAGTGTTCAGCCGATGCAATCAAGCGCTATCAGAACCGTATTTCCGGTC
CATTGCTGGACCGGATTGATCTGCATATTGATGTGCCACCCTTGCAGGCGCATGAACTCCAGCAAACCACACCTGCTGAG
AATTCAGACACAGTCAGGAAACGTGTCATCTTAGCTTATGAACAGCAGCTCCAACGCCAAGGTTGCCTTAACCAGCTGCT
TTCCCCTAAACAGCTCGAACTGCATGCACAGCTGGACCAAAGCTCACTACGTATAATTGAAATGGCACAGCAACGACTCA
ATCTCTCTGCCCGTGCTTATCACCGGGTTTTACGTGTAGCCAGAACCATTGCTGATCTGGCACTTTCCAAAGAAATCCAG
ACAAGTCATTTAAGTGAAGCGCTTTCTTACCGCAGTCAGTCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.2

100

0.528
  comM Vibrio campbellii strain DS40M4

51.6

100

0.522
  comM Vibrio cholerae strain A1552

51.509

100

0.518
  comM Glaesserella parasuis strain SC1401

50.797

100

0.516
  comM Legionella pneumophila str. Paris

50.403

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.403

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.918

100

0.478

Multiple sequence alignment