Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   C6N17_RS02420 Genome accession   NZ_CP027254
Coordinates   389519..390328 (+) Length   269 a.a.
NCBI ID   WP_002117088.1    Uniprot ID   A0A013UCU5
Organism   Acinetobacter pittii strain WCHAP100020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384519..395328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N17_RS02385 (C6N17_02390) - 385077..385232 (-) 156 Protein_347 hypothetical protein -
  C6N17_RS02390 (C6N17_02395) rpoZ 385271..385549 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  C6N17_RS02395 (C6N17_02400) gmk 385622..386251 (-) 630 WP_002116973.1 guanylate kinase -
  C6N17_RS02400 (C6N17_02405) ispH 386374..387324 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C6N17_RS02405 (C6N17_02410) fimU 387494..387967 (+) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  C6N17_RS02410 (C6N17_02415) pilV 387961..388521 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  C6N17_RS02415 (C6N17_02420) pilW 388521..389522 (+) 1002 WP_106389223.1 PilW family protein Machinery gene
  C6N17_RS02420 (C6N17_02425) pilX 389519..390328 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C6N17_RS02425 (C6N17_02430) pilY1 390340..394194 (+) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  C6N17_RS02430 (C6N17_02435) pilY2 394205..394687 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  C6N17_RS02435 (C6N17_02440) pilE 394684..395109 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28518.31 Da        Isoelectric Point: 7.2645

>NTDB_id=276072 C6N17_RS02420 WP_002117088.1 389519..390328(+) (pilX) [Acinetobacter pittii strain WCHAP100020]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=276072 C6N17_RS02420 WP_002117088.1 389519..390328(+) (pilX) [Acinetobacter pittii strain WCHAP100020]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGGGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTGAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTGAAAGAGCACGAAAGTAATCCCGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCTGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTGAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013UCU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914

Multiple sequence alignment