Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   C6N17_RS02415 Genome accession   NZ_CP027254
Coordinates   388521..389522 (+) Length   333 a.a.
NCBI ID   WP_106389223.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WCHAP100020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383521..394522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N17_RS02385 (C6N17_02390) - 385077..385232 (-) 156 Protein_347 hypothetical protein -
  C6N17_RS02390 (C6N17_02395) rpoZ 385271..385549 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  C6N17_RS02395 (C6N17_02400) gmk 385622..386251 (-) 630 WP_002116973.1 guanylate kinase -
  C6N17_RS02400 (C6N17_02405) ispH 386374..387324 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C6N17_RS02405 (C6N17_02410) fimU 387494..387967 (+) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  C6N17_RS02410 (C6N17_02415) pilV 387961..388521 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  C6N17_RS02415 (C6N17_02420) pilW 388521..389522 (+) 1002 WP_106389223.1 PilW family protein Machinery gene
  C6N17_RS02420 (C6N17_02425) pilX 389519..390328 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C6N17_RS02425 (C6N17_02430) pilY1 390340..394194 (+) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35815.54 Da        Isoelectric Point: 6.9683

>NTDB_id=276071 C6N17_RS02415 WP_106389223.1 388521..389522(+) (pilW) [Acinetobacter pittii strain WCHAP100020]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQNSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTASTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNTSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQMSVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=276071 C6N17_RS02415 WP_106389223.1 388521..389522(+) (pilW) [Acinetobacter pittii strain WCHAP100020]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTGGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAA
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGGCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACAACCCCTTGGGGCGGTGTTGTATTAACTGCTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGCGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACACTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACAAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGACTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATGTCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.384

100

0.844

Multiple sequence alignment