Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | C6N17_RS02405 | Genome accession | NZ_CP027254 |
| Coordinates | 387494..387967 (+) | Length | 157 a.a. |
| NCBI ID | WP_016802756.1 | Uniprot ID | A0A1C2SAU9 |
| Organism | Acinetobacter pittii strain WCHAP100020 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 382494..392967
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N17_RS02380 (C6N17_02385) | spoT | 382956..385061 (-) | 2106 | WP_002116807.1 | RelA/SpoT family protein | - |
| C6N17_RS02385 (C6N17_02390) | - | 385077..385232 (-) | 156 | Protein_347 | hypothetical protein | - |
| C6N17_RS02390 (C6N17_02395) | rpoZ | 385271..385549 (-) | 279 | WP_002116990.1 | DNA-directed RNA polymerase subunit omega | - |
| C6N17_RS02395 (C6N17_02400) | gmk | 385622..386251 (-) | 630 | WP_002116973.1 | guanylate kinase | - |
| C6N17_RS02400 (C6N17_02405) | ispH | 386374..387324 (+) | 951 | WP_002116992.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| C6N17_RS02405 (C6N17_02410) | fimU | 387494..387967 (+) | 474 | WP_016802756.1 | pilus assembly FimT family protein | Machinery gene |
| C6N17_RS02410 (C6N17_02415) | pilV | 387961..388521 (+) | 561 | WP_080564113.1 | type IV pilus modification protein PilV | Machinery gene |
| C6N17_RS02415 (C6N17_02420) | pilW | 388521..389522 (+) | 1002 | WP_106389223.1 | PilW family protein | Machinery gene |
| C6N17_RS02420 (C6N17_02425) | pilX | 389519..390328 (+) | 810 | WP_002117088.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16939.62 Da Isoelectric Point: 7.7942
>NTDB_id=276069 C6N17_RS02405 WP_016802756.1 387494..387967(+) (fimU) [Acinetobacter pittii strain WCHAP100020]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=276069 C6N17_RS02405 WP_016802756.1 387494..387967(+) (fimU) [Acinetobacter pittii strain WCHAP100020]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
87.898 |
100 |
0.879 |