Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C6N17_RS02435 Genome accession   NZ_CP027254
Coordinates   394684..395109 (+) Length   141 a.a.
NCBI ID   WP_002117055.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WCHAP100020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389684..400109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N17_RS02425 (C6N17_02430) pilY1 390340..394194 (+) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  C6N17_RS02430 (C6N17_02435) pilY2 394205..394687 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  C6N17_RS02435 (C6N17_02440) pilE 394684..395109 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  C6N17_RS02440 (C6N17_02445) rpsP 395257..395508 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  C6N17_RS02445 (C6N17_02450) rimM 395528..396076 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  C6N17_RS02450 (C6N17_02455) trmD 396119..396874 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  C6N17_RS02455 (C6N17_02460) rplS 397094..397462 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  C6N17_RS02460 (C6N17_02465) lip 397514..398455 (-) 942 WP_014207808.1 lipase family alpha/beta hydrolase -
  C6N17_RS02465 (C6N17_02470) - 398571..399602 (-) 1032 WP_019767421.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15172.33 Da        Isoelectric Point: 7.1292

>NTDB_id=276075 C6N17_RS02435 WP_002117055.1 394684..395109(+) (pilE) [Acinetobacter pittii strain WCHAP100020]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKIVHNRYPSNATITSVYGSSVSPQQG
QALYNLAFASITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=276075 C6N17_RS02435 WP_002117055.1 394684..395109(+) (pilE) [Acinetobacter pittii strain WCHAP100020]
ATGAAGAATGGTTTTACTTTAATAGAACTCATGATTGTAGTCGCAATAATTGCAATTTTAGCGGCTATAGCTACACCTTC
GTATTTGCAGTATTTACGCAAAGGACATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAATAGTTCACAATCGCTATCCATCGAATGCAACGATTACATCGGTTTATGGTTCTAGTGTCAGTCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTCGCTAGCATAACTGATTCAAGTTGGGTGTTAACTGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.106

100

0.851
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518

Multiple sequence alignment