Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   C3V42_RS05260 Genome accession   NZ_CP027235
Coordinates   1079619..1079966 (-) Length   115 a.a.
NCBI ID   WP_046942449.1    Uniprot ID   -
Organism   Haemophilus sp. oral taxon 036 strain F0629     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1074619..1084966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3V42_RS05235 (C3V42_05240) thiQ 1075435..1076082 (-) 648 WP_106013891.1 thiamine ABC transporter ATP-binding protein -
  C3V42_RS05240 (C3V42_05245) thiP 1076066..1077682 (-) 1617 WP_106013892.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  C3V42_RS05245 (C3V42_05250) thiB 1077687..1078685 (-) 999 WP_106013893.1 thiamine ABC transporter substrate binding subunit -
  C3V42_RS05250 (C3V42_05255) - 1078863..1079096 (-) 234 WP_240610377.1 hypothetical protein -
  C3V42_RS05255 (C3V42_05260) - 1079213..1079590 (+) 378 WP_106013895.1 DUF305 domain-containing protein -
  C3V42_RS05260 (C3V42_05265) comE1/comEA 1079619..1079966 (-) 348 WP_046942449.1 helix-hairpin-helix domain-containing protein Machinery gene
  C3V42_RS05265 (C3V42_05270) ispH 1080137..1081081 (-) 945 WP_005634483.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C3V42_RS05270 (C3V42_05275) lspA 1081078..1081593 (-) 516 WP_106013896.1 signal peptidase II -
  C3V42_RS05275 (C3V42_05280) - 1081663..1083222 (-) 1560 WP_106013897.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12304.17 Da        Isoelectric Point: 8.0102

>NTDB_id=275947 C3V42_RS05260 WP_046942449.1 1079619..1079966(-) (comE1/comEA) [Haemophilus sp. oral taxon 036 strain F0629]
MKLMKTLFTSVVLCGALGASLAFAEEKAAEQVVQPVVATQTEAQVAPTAVSDKLNINTATVSEIQKALTGIGAKKAEAIV
QYREKHGNFTSAEQLLEVQGIGKATLERNRDRITF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=275947 C3V42_RS05260 WP_046942449.1 1079619..1079966(-) (comE1/comEA) [Haemophilus sp. oral taxon 036 strain F0629]
ATGAAATTAATGAAAACATTATTTACTTCGGTGGTATTGTGCGGGGCTCTAGGTGCGTCTTTGGCTTTTGCTGAGGAAAA
AGCTGCAGAGCAGGTCGTTCAACCTGTTGTAGCAACTCAAACTGAAGCTCAAGTTGCACCAACTGCTGTGAGTGATAAAT
TGAATATCAATACGGCAACCGTTAGTGAAATTCAAAAAGCCTTAACAGGAATCGGTGCAAAAAAAGCAGAAGCGATAGTG
CAATATCGTGAAAAACACGGTAATTTCACGAGTGCTGAACAACTATTAGAAGTGCAAGGAATTGGTAAAGCAACACTTGA
AAGAAACCGTGATCGAATCACTTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

83.036

97.391

0.809
  comEA/comE1 Glaesserella parasuis strain SC1401

54.867

98.261

0.539
  comEA Vibrio cholerae C6706

44.954

94.783

0.426
  comEA Vibrio cholerae strain A1552

44.954

94.783

0.426
  comEA Vibrio campbellii strain DS40M4

38.182

95.652

0.365

Multiple sequence alignment